| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,654,663 – 1,654,768 |
| Length | 105 |
| Max. P | 0.528714 |
| Location | 1,654,663 – 1,654,768 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.40 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -22.97 |
| Energy contribution | -23.97 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.87 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1654663 105 + 22224390 AACCAAUUUCGCACUCGUGCCUGCGACCGGACAUCAUU-UGAAUCGUUCCAGGUCAUCUGACCUCAAGUACACAGAUUUGCAUACAU----AUGCAUGUACAUCGAUGUA- ..((....(((((........)))))..))(((((...-...........(((((....)))))...(((((......(((((....----))))))))))...))))).- ( -25.90) >DroSec_CAF1 19475 111 + 1 AACCAAUUUCGCACUCGUGCCUGCGACCGGACAUCAUUUUGAAUCGUUCCAGGUCAUCUGACCUCAAGUACACGGAUUUGCAUACAUACAUAUGUAUGUACAUCGAUGUAU ..((....(((((........)))))..))(((((..........((...(((((....))))).....))...(((.(((((((((....))))))))).)))))))).. ( -30.10) >DroSim_CAF1 8737 103 + 1 AACCAAUUUCGCACUCGUGCCUGCGACCGGACAUCAUUUUGAAUCGUUCCAGGUCAUCUGACCUCAAGUACACGGAUUUGCAUACAU--------AUGUACAUCGAUGUGU ..((....(((((........)))))..))(((((..........((...(((((....))))).....))...(((.(((((....--------))))).)))))))).. ( -23.40) >consensus AACCAAUUUCGCACUCGUGCCUGCGACCGGACAUCAUUUUGAAUCGUUCCAGGUCAUCUGACCUCAAGUACACGGAUUUGCAUACAU____AUG_AUGUACAUCGAUGUAU ..((....(((((........)))))..))(((((..........((...(((((....))))).....))...(((.(((((.(((....))).))))).)))))))).. (-22.97 = -23.97 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:34 2006