Locus 583

Sequence ID X_DroMel_CAF1
Location 1,650,325 – 1,650,437
Length 112
Max. P 0.500000
window930

overview

Window 0

Location 1,650,325 – 1,650,437
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 87.95
Mean single sequence MFE -48.69
Consensus MFE -34.59
Energy contribution -36.93
Covariance contribution 2.34
Combinations/Pair 1.09
Mean z-score -2.08
Structure conservation index 0.71
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1650325 112 - 22224390
AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUGGAUGGAUACGUUGCGUCUCUGCCUCUCUGAAGGGGCAGACGUGCCACCCACCCCAUCACAGCA
.((((((..(.(((((.(((..(((((.((((....((((......))))...).))))))))..)(((((((((....)))))))))...)).))))))..)))))).... ( -46.60)
>DroEre_CAF1 16810 108 - 1
AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUG----GAUACGUUGCGUCGCUGCUCUGCGGAAGGGGCAGACGAGCCACCCACCCCGGCCCAACC
.........((((((((((((((((((..(((((((((((......)))----)...)))))))..))))))))))))..(((((......))).))...))))))...... ( -53.60)
>DroYak_CAF1 15644 108 - 1
AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUG----GAUACGUUGCGUCGCCUCUCUGCGGAAGGGGCAGACAUUCCACCCACCCCAGCCCAGCC
.........((((((((((((((..((..(((((((((((......)))----)...)))))))..))..)))))))...((((...............)))).))))))). ( -45.86)
>consensus
AGUGAUGCUGCUGGGUCGCGGAGCAGCAGUGCAAUGCCAUUGUGUUGUG____GAUACGUUGCGUCGCUGCUCUGCGGAAGGGGCAGACGUGCCACCCACCCCAGCCCAGCC
......(((((((((((((((((((((..(((((((.....................)))))))..))))))))))))..(((((......))).))...)))))..)))). (-34.59 = -36.93 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:31 2006