Locus 582

Sequence ID X_DroMel_CAF1
Location 1,647,950 – 1,648,055
Length 105
Max. P 0.848177
window929

overview

Window 9

Location 1,647,950 – 1,648,055
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -22.35
Consensus MFE -21.00
Energy contribution -21.00
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -1.60
Structure conservation index 0.94
SVM decision value 0.78
SVM RNA-class probability 0.848177
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1647950 105 - 22224390
UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUCUUCCCAUCUUCCCGUCUUCCCAUC
.................(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))............................. ( -20.90)
>DroSec_CAF1 12932 97 - 1
UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUCUU--------CCCGUCUUCCCAUC
.................(((.((((((...)))))).)))...((((((..(((((((....))))))).)))))).......--------.............. ( -20.90)
>DroEre_CAF1 14497 105 - 1
UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUAUUCCUGUAUUCCUGUCUUCCUGCC
...((((..........(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))........................)))). ( -23.60)
>DroYak_CAF1 13273 105 - 1
UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUAUUCCUGUAUGCCUGUCUUCCUGCC
...((((..........(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))..((((......))))........)))). ( -24.00)
>consensus
UAUGUAGUUUCAUUCUUGUUCCGCAUGUUUCAUGUGCAACUUUGAGUACCUGUGCGUCGAAUGAUGCAUUGUAUUCCUGUAUUCCUGUAUUCCCGUCUUCCCACC
...((((..........(((.((((((...)))))).)))...((((((..(((((((....))))))).))))))........................)))). (-21.00 = -21.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:30 2006