| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,642,730 – 1,642,842 |
| Length | 112 |
| Max. P | 0.726790 |
| Location | 1,642,730 – 1,642,842 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 88.14 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -19.88 |
| Energy contribution | -19.57 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1642730 112 - 22224390 GCGGGAUAU----AUAGUAAAACCCGGCAUGUUU--UAUAGUUCUAUAGCAUCUAAGUGUGUUUCUGAGGACUGCUUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA (((((((((----...(((((((.......))))--)))((((((..(((((......)))))....)))))).........(((((((..(((....))))))))))))))))))). ( -27.70) >DroSec_CAF1 7622 109 - 1 GCGGGAUAUAUGUAUAGUAAAACCCGGCAUGUUC--UAUA-------AGCAUCUAAGUGUGUUUUUGAGGACUGCCUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA (((((((((................((((.((((--(..(-------(((((......))))))...)))))))))......(((((((..(((....))))))))))))))))))). ( -32.80) >DroEre_CAF1 9436 102 - 1 GCGGGAUA------UAAUAAAACCCGACAUGUUC--UAUA-------AGCAUCUAAGUGUGUUUG-CAGGACUGCUUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA ((((((((------(.((((((...(.((.((((--(.((-------(((((......)))))))-.)))))))).))))))(((((((..(((....))))))))))))))))))). ( -27.00) >DroYak_CAF1 7775 104 - 1 GCGGGAUA------UAAUAAAACCCGGCAUGUUCUCUAUA-------AGCAUCUAAGUGUGUUUG-CAGGACUGCUUUUUGUUUGGAAGAUGUGUAAAUACUUUCCAAGUGUUUUGCA ((((((((------(.((((((...((((.(((((...((-------(((((......)))))))-.)))))))))))))))(((((((.(((....))).)))))))))))))))). ( -28.50) >consensus GCGGGAUA______UAAUAAAACCCGGCAUGUUC__UAUA_______AGCAUCUAAGUGUGUUUG_CAGGACUGCUUUUUGUUUGGAAGAUGUAGAAAUACUUUCCAAGUGUUUUGCA ((((((((.................((((.((((.............(((((......))))).....)))))))).....((((((((..(((....))))))))))))))))))). (-19.88 = -19.57 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:27 2006