Locus 579

Sequence ID X_DroMel_CAF1
Location 1,642,457 – 1,642,559
Length 102
Max. P 0.623111
window924 window925

overview

Window 4

Location 1,642,457 – 1,642,559
Length 102
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -23.65
Consensus MFE -20.94
Energy contribution -21.00
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -1.45
Structure conservation index 0.89
SVM decision value 0.18
SVM RNA-class probability 0.623111
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1642457 102 + 22224390
UAUACUUAGUUGGAAG-AAGAUCAGACAUAUACAAUAGUAUGCUAGUCGAGUCCUCUACUCUUGUUAUGGAAUGGUUUUAACCAUUCACCUACUAAGUUGGUU
...(((((((.((.((-(.(((..(((.(((((....)))))...)))..))).)))............(((((((....))))))).)).)))))))..... ( -28.00)
>DroSec_CAF1 7356 102 + 1
UAAACUUAGUUGGAAG-AAGAUCAGACAUUUACAAUAGUAUGCUAGUCGAGUGCUCAACUCUUGUUAUGGAAUGGCUUUAACUAUUCACCUACUAAGUUGGUU
..((((((((.((((.-((((...(((((((....(((....)))...))))).))...)))).))...((((((......)))))).)).)))))))).... ( -24.10)
>DroEre_CAF1 9175 103 + 1
UAUACUUAGUUGGGAGAAAGAUCCGAUAUAUACAAUAGAAUGCUAGUCGAGUGCUCUACUCUUGUUAUGGAAUGGCUUUAACUAUUCACCUACUAAGUUGGUU
...(((((((.(((............((((.((((((((..(((.....)))..))))...))))))))((((((......)))))).))))))))))..... ( -21.50)
>DroYak_CAF1 7506 103 + 1
UAUACUUAGUUGGGAUAAAAAUCAGAUAUAUACAAUAGUGUGCUAGUCGAGUGCUCUACUCUUGUUAUGGAACGGCUUUAACUAUUCACCUACUAAGUUGGUU
...(((((((.(((((....)))..........((((((.....(((((((((...)))))..(((....)))))))...))))))..)).)))))))..... ( -21.00)
>consensus
UAUACUUAGUUGGAAG_AAGAUCAGACAUAUACAAUAGUAUGCUAGUCGAGUGCUCUACUCUUGUUAUGGAAUGGCUUUAACUAUUCACCUACUAAGUUGGUU
...(((((((.((.............((((.(((((((....)))...((((.....))))))))))))((((((......)))))).)).)))))))..... (-20.94 = -21.00 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 1,642,457 – 1,642,559
Length 102
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -20.98
Consensus MFE -15.62
Energy contribution -15.75
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.75
Structure conservation index 0.74
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1642457 102 - 22224390
AACCAACUUAGUAGGUGAAUGGUUAAAACCAUUCCAUAACAAGAGUAGAGGACUCGACUAGCAUACUAUUGUAUAUGUCUGAUCUU-CUUCCAACUAAGUAUA
.....(((((((.((.(((((((....)))))))............((((((.(((((....((((....))))..))).))))))-)).)).)))))))... ( -27.40)
>DroSec_CAF1 7356 102 - 1
AACCAACUUAGUAGGUGAAUAGUUAAAGCCAUUCCAUAACAAGAGUUGAGCACUCGACUAGCAUACUAUUGUAAAUGUCUGAUCUU-CUUCCAACUAAGUUUA
....((((((((.((.....((....((.((((..........((((((....)))))).(((......))).)))).))...)).-...)).)))))))).. ( -19.60)
>DroEre_CAF1 9175 103 - 1
AACCAACUUAGUAGGUGAAUAGUUAAAGCCAUUCCAUAACAAGAGUAGAGCACUCGACUAGCAUUCUAUUGUAUAUAUCGGAUCUUUCUCCCAACUAAGUAUA
.....(((((((.((.((((.((....)).))))........(((.((((.(..(((...(((......))).....)))..)))))))))).)))))))... ( -19.40)
>DroYak_CAF1 7506 103 - 1
AACCAACUUAGUAGGUGAAUAGUUAAAGCCGUUCCAUAACAAGAGUAGAGCACUCGACUAGCACACUAUUGUAUAUAUCUGAUUUUUAUCCCAACUAAGUAUA
.....(((((((.((.((.(((((......(((....)))..((((.....)))))))))(((......)))................)))).)))))))... ( -17.50)
>consensus
AACCAACUUAGUAGGUGAAUAGUUAAAGCCAUUCCAUAACAAGAGUAGAGCACUCGACUAGCAUACUAUUGUAUAUAUCUGAUCUU_CUCCCAACUAAGUAUA
.....(((((((.((.((((.((....)).))))........((((.....))))(((..(((......)))....)))...........)).)))))))... (-15.62 = -15.75 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:26 2006