| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,635,781 – 1,635,900 |
| Length | 119 |
| Max. P | 0.989835 |
| Location | 1,635,781 – 1,635,900 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.37 |
| Mean single sequence MFE | -25.37 |
| Consensus MFE | -16.21 |
| Energy contribution | -14.90 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.989835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1635781 119 + 22224390 GAGAGCACACACAGCUCAUUUGGACUGAAGUUUUUAUAGGCCAA-AGAGAAUGCUUUUUACUUACUGAACCCAUUUUUAAUAAAUAACCCAACAAUCGGCUACUAAAAGGCCUCGGUGUA ..((((.......))))...((.(((((.((((((...((((((-((((....))))))..(((.((((......)))).)))..............))))....)))))).))))).)) ( -21.90) >DroEre_CAF1 2043 115 + 1 AAAAGCACACACAGCUCAUUUAAACUGAAGUUUUUAUCGCUUAUUAUUUAUUGCUUAA----UACUGAACCUAAUUUCAGUAAUUAGCUACUGAAUCGGCC-UUUAAAGGUCUCAGUGUA ..(((((....(((..........)))((((.......)))).........))))).(----((((((.......(((((((......)))))))..((((-(....)))))))))))). ( -24.80) >DroYak_CAF1 1018 115 + 1 UAAAACGCACCCUGCUCAUUUGAACUAAAGUUUUUAUCGGCCAA-AGCAAAUGCUUUA----UGCUGAACCUAAUUUCAGUAAAUAGCCAAACAUUCGGCUACUUAAAGGCCUCAGUGUA ....((((.........((..((((....))))..)).((((((-(((....))))).----(((((((......)))))))..(((((........)))))......))))...)))). ( -29.40) >consensus AAAAGCACACACAGCUCAUUUGAACUGAAGUUUUUAUCGGCCAA_AGAAAAUGCUUUA____UACUGAACCUAAUUUCAGUAAAUAGCCAAACAAUCGGCUACUUAAAGGCCUCAGUGUA ....((((.....(((.((..((((....))))..)).))).....................(((((((......)))))))...............((((.......))))...)))). (-16.21 = -14.90 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:20 2006