Locus 570

Sequence ID X_DroMel_CAF1
Location 1,630,058 – 1,630,152
Length 94
Max. P 0.920147
window899

overview

Window 9

Location 1,630,058 – 1,630,152
Length 94
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 93.68
Mean single sequence MFE -28.10
Consensus MFE -26.37
Energy contribution -25.27
Covariance contribution -1.10
Combinations/Pair 1.14
Mean z-score -2.21
Structure conservation index 0.94
SVM decision value 1.13
SVM RNA-class probability 0.920147
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1630058 94 - 22224390
GCACACACUUGCAAGCCCUUGUGACACACACACUGACAUGGCCGGACAAACAAAUCAAUGCUUGUUUGUUUUAUCUUCGGUGCGGUGCUGC-UCU
((((((..(..(((....)))..)....(.((((((...((..((((((((((........))))))))))..)).)))))).)))).)))-... ( -25.80)
>DroEre_CAF1 26520 95 - 1
GCACACACUGGCGAGCCCUUGUCACACACACACUGAUAUGGCCGGACAAACAAAUCAAUUCUUGUUUGUUUUAUCCUCGGUGCGGUGCUGCCUUU
((((.((((((((.(((..(((((.........))))).)))))(((((((((........)))))))))......))))))..))))....... ( -28.30)
>DroYak_CAF1 29463 95 - 1
GCACACACUGGCGAGCCCUUGUCACACAUACACUGACAUGGCCGGACAAACAAAUCAAUUCUUGUUUGUUUUAUCCUCGGUGCGGUGCUGCCUCU
((((.((((((((.(((..(((((.........))))).)))))(((((((((........)))))))))......))))))..))))....... ( -30.20)
>consensus
GCACACACUGGCGAGCCCUUGUCACACACACACUGACAUGGCCGGACAAACAAAUCAAUUCUUGUUUGUUUUAUCCUCGGUGCGGUGCUGCCUCU
((((....((((((....))))))....(.((((((...((..((((((((((........))))))))))...)))))))).)))))....... (-26.37 = -25.27 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:01 2006