| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,627,968 – 1,628,088 |
| Length | 120 |
| Max. P | 0.776112 |
| Location | 1,627,968 – 1,628,088 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -36.95 |
| Consensus MFE | -27.10 |
| Energy contribution | -28.13 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1627968 120 + 22224390 GGCGAGCUGCGACCAGGACAACAUUUUGCGCAGAAUGCCAAAAUGGAAACUAUUUUUGAAUAGCUCUUGCAUUGAAGGCUCCUUGGAAGGGCUGAGUCAAGCCGGCACCUUGUUCGCUUG (((((((.....(((((....(((((((.((.....)))))))))................(((.(((......)))))).)))))((((((((.(.....))))).))))))))))).. ( -37.50) >DroSec_CAF1 23221 120 + 1 GGCGAGCUGCGACCAGGACAACAUUUUGCGCAGAAUGCCAAAAUGGAAACUAUUUUUGAAUAGCCCUUACCAUGGGGGCUCCUUGGAAGGGCUGAGUCAAGUCCGCACCUUGUUCGCUUG (((((((........((((..(((((((.((.....)))))))))..........((((.((((((((.(((.(((....))))))))))))))..)))))))).......))))))).. ( -46.16) >DroYak_CAF1 27435 96 + 1 GGCGAGCUGCGACCAGGACAACAUUCUGCGCAGAAUGCCAAAAUAGAAACUAUUUUUGAAUAGAGCUC--CAU--------CCUGGAAAG--------------GCACCUUGUGCGCCCG ((((..(((((..(((((.....))))))))))..((((..........(((((....)))))...((--(..--------...)))..)--------------))).......)))).. ( -27.20) >consensus GGCGAGCUGCGACCAGGACAACAUUUUGCGCAGAAUGCCAAAAUGGAAACUAUUUUUGAAUAGCCCUU_CCAUG__GGCUCCUUGGAAGGGCUGAGUCAAG_C_GCACCUUGUUCGCUUG ((((((((((..(((((....(((((((.((.....)))))))))....(((((....)))))..................)))))...((((......)))).)))....))))))).. (-27.10 = -28.13 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:57 2006