Locus 562

Sequence ID X_DroMel_CAF1
Location 1,615,422 – 1,615,517
Length 95
Max. P 0.500000
window884

overview

Window 4

Location 1,615,422 – 1,615,517
Length 95
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 78.01
Mean single sequence MFE -36.55
Consensus MFE -24.34
Energy contribution -25.40
Covariance contribution 1.06
Combinations/Pair 1.15
Mean z-score -1.55
Structure conservation index 0.67
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1615422 95 + 22224390
GCGGAGCAACAGAACUUAUUUGUUUUGGCUGCCAGCCGCCGGUUGGAGCAGU-CGCCGAGCCAGGUCCGUCCGAGGACUACUCCUCCCCAGCCAAG
((((.(((.((((((......))))))..)))...)))).((((((.((...-.)).(((...(((((......))))).)))....))))))... ( -36.00)
>DroSec_CAF1 11086 95 + 1
GCGGAGCAGCAGAACUUAUUUGUUUUGUCUGCCAGCCGCCGGUUGGAGCAGU-CGCCGAGCCAGGUCCGUCCGAGGACUGCUCCUCCCCAGCCAAG
((((.((((((((((......)))))).))))...)))).((((((.((...-.)).((((..(((((......)))))))))....))))))... ( -42.60)
>DroSim_CAF1 27048 95 + 1
GCGGAGCAGCAGAACUUAUUUGUUUUGUCUGCCAGCCGCCGGUUGGAGCAGU-CGCCGAGCCAGGUCCGUCCGAGGACUGCUCCUCCCCAGCCAAG
((((.((((((((((......)))))).))))...)))).((((((.((...-.)).((((..(((((......)))))))))....))))))... ( -42.60)
>DroEre_CAF1 11860 75 + 1
GCGAGGCAGCGGAACCUUUUUGUUUUGGCUGCCCGCCGUUGCUGGGAACACUCCGCCGCACCAGAUCCAUCCAAG---------------------
(((.((((((.(((.(.....).))).))))))))).(.(((.((((....))).).))).).............--------------------- ( -25.00)
>consensus
GCGGAGCAGCAGAACUUAUUUGUUUUGGCUGCCAGCCGCCGGUUGGAGCAGU_CGCCGAGCCAGGUCCGUCCGAGGACUGCUCCUCCCCAGCCAAG
((((.((((((((((......)))))).))))...)))).((((.(.((.....))).)))).(((((......)))))................. (-24.34 = -25.40 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:47 2006