Locus 559

Sequence ID X_DroMel_CAF1
Location 1,611,047 – 1,611,164
Length 117
Max. P 0.681284
window879

overview

Window 9

Location 1,611,047 – 1,611,164
Length 117
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 88.25
Mean single sequence MFE -40.67
Consensus MFE -28.22
Energy contribution -32.06
Covariance contribution 3.84
Combinations/Pair 1.09
Mean z-score -2.12
Structure conservation index 0.69
SVM decision value 0.31
SVM RNA-class probability 0.681284
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1611047 117 + 22224390
AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGAAGCACGCUGGCAGGGGCGGCGACGGUAAAUGCCGUCUGCCAGCCACAUACUUGCGCCCUCCUUUGUU-
.((((((((((.....((((((((........))))).))).....)))..)))))))((..((((((((((((((....)))))).))).((.........)))))))))......- ( -44.80)
>DroSec_CAF1 6797 117 + 1
AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGGAGCACGCUGGCAGGGGCGGCGACGGUAACUGCCGUCUGCCAGCCACAUACUUGCGCCCUCCUUUGUU-
.(((((((((......((((((((........))))).)))........)))))))))((..((((((((((((((....)))))).))).((.........)))))))))......- ( -47.74)
>DroSim_CAF1 22752 109 + 1
AAGCGUGU-CAUCU-UGGCCAAG--UCAUAAUU-UUGCGCCUUUAUUGGGAGCACGCUGGCAG-GGCGGCGACGGUAACUGC-GUCUGCCAGCCACAUACUUGCGCCCUCCUUUGU--
.(((((((-..((.-.(((((((--.......)-))).)))......))..)))))))((.((-((((((((((.......)-))).))).((.........))))))))).....-- ( -39.80)
>DroEre_CAF1 7606 103 + 1
AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUU-------------CCGGGGCGGCGACGGUAACUGCC-CCUGCCAGCCACAUACUUGCGCCCUGCUUUGUU-
((((............((((((((........))))).)))......-------------..(((((((((..(((....)))-..)))).((.........)))))))))))....- ( -28.90)
>DroYak_CAF1 8328 118 + 1
AAGCGGGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGGGCCACGUUGGCAGGGGCGGCGACAGUAACUGCCGCCUGCCAGCCACAUACUUGCGUCCUCCUUUGUUU
..((((.((((.....((((((((........))))).))).....)))).))..((((((((((((((.........))))).))))))))).........)).............. ( -42.10)
>consensus
AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGGAGCACGCUGGCAGGGGCGGCGACGGUAACUGCCGUCUGCCAGCCACAUACUUGCGCCCUCCUUUGUU_
.(((((((((......((((((((........))))).)))........)))))))))....((((((((((((((....)))))).))).((.........)))))))......... (-28.22 = -32.06 +   3.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:43 2006