Locus 554

Sequence ID X_DroMel_CAF1
Location 1,590,132 – 1,590,222
Length 90
Max. P 0.506648
window871

overview

Window 1

Location 1,590,132 – 1,590,222
Length 90
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.05
Mean single sequence MFE -20.08
Consensus MFE -13.18
Energy contribution -13.35
Covariance contribution 0.17
Combinations/Pair 1.18
Mean z-score -1.16
Structure conservation index 0.66
SVM decision value -0.05
SVM RNA-class probability 0.506648
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1590132 90 - 22224390
UCACGUUGCAGUUAAUAGGAUUUGGCUGA---AGAGCGGAAUGAAAUUAAUUGUUUCAUUUGUUUAUAAAACGU---UCA------------AGUCACUGCUCUUG---CU
........(((((((......)))))))(---(((((((((((((((.....)))))))).(((.....)))..---...------------.....)))))))).---.. ( -22.50)
>DroPse_CAF1 70469 93 - 1
UAACGUUGCAGUUAAUAGGAUUUGGCUGAAACAGAGUGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAAUAC---UCA------------AGUCAUUGUUGUUG---CA
(((((..(((((((((..(((((.(((.......))).)))))..)))))))))..).((((....))))....---...------------.......))))...---.. ( -19.10)
>DroGri_CAF1 71426 89 - 1
---CGUUGCAGUUAAUAGGAUUUAGCUGU---AACAUGAAAUUAAAUUAAUUGUUGCAUUUGUUUACAAAAUAC---CCA------------UGUCUU-CUUGUUGUUGUU
---.(((((((((((......))))))))---)))...............((((.((....))..)))).....---...------------......-............ ( -15.60)
>DroYak_CAF1 51516 90 - 1
UCACGUUGCAGUUAAUAGGAUUUGGCUGG---AGAGUGGAAUGAAAUUAAUUGUUUCAUUUGUUUAUAAAACGU---UCA------------AGUCACUGCUCGUG---CA
.(((....(((((((......)))))))(---(((((((((((((((.....)))))))))(((.....)))..---...------------...)))).))))))---.. ( -22.80)
>DroAna_CAF1 66866 105 - 1
UUACGUUGCAGUUAAUAGGAUUUGGCUGG---AGAACGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAACGGAGUCAGAGUCAGAGCCAGAGUGAUUGUUGUUG---CA
....((.(((((((...((.(((((((.(---(...(((((.(((.....))).))).((((....)))).))...))..))))))).))....)))))))....)---). ( -21.40)
>DroPer_CAF1 71222 93 - 1
UAACGUUGCAGUUAAUAGGAUUUGGCUGAAACAGAGUGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAAUAC---UCA------------AGUCAUUGUUGUUG---CA
(((((..(((((((((..(((((.(((.......))).)))))..)))))))))..).((((....))))....---...------------.......))))...---.. ( -19.10)
>consensus
UAACGUUGCAGUUAAUAGGAUUUGGCUGA___AGAGUGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAACAC___UCA____________AGUCAUUGUUGUUG___CA
....(..(((((((((..(((((.(((.......))).)))))..)))))))))..).((((....))))......................................... (-13.18 = -13.35 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:35 2006