| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,584,536 – 1,584,631 |
| Length | 95 |
| Max. P | 0.881656 |
| Location | 1,584,536 – 1,584,631 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.88 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.48 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1584536 95 - 22224390 ------CAAC-AGCUCGUUGUAUCAAUUGACAGCAAAUAAAAUUGUCAGUUG-GCUGGCAAACAUGGCAAACAGGC-GGGCGAAUAAACAUGGGC-------CAUGCGAGC ------....-.(((((((((.(((((((((((.........))))))))))-)...)))).((((((...((...-.(.........).)).))-------))))))))) ( -28.00) >DroPse_CAF1 63598 100 - 1 AGUCAACCAC-AGCAUGUUGUAUCAAUUGACAGCGAAUAAAAAUGUCAGUUGGGCUGGCAAACAUGG----------AGCCAAAUAAACAAGAGCCAAGACCCAUGCGGGU .....(((..-.(((((......(((((((((...........)))))))))(((((((........----------.)))...........))))......))))).))) ( -26.30) >DroSec_CAF1 45975 95 - 1 ------CAAC-AGCUCGUUGUAUCAAUUGACAGCAAAUAAAAUUGCCAGUUG-GCUGGCAAACAUGGCAAACAGGC-GGGCGAAUAAACAUGGGC-------CAUGCGAGC ------....-.(((((((((........)))))........(((((((...-.))))))).((((((...((...-.(.........).)).))-------)))).)))) ( -29.30) >DroEre_CAF1 49054 85 - 1 ------CAAC-GGCUUGUUGUAUCAAUUGACAGCAAAUAAAAUUGUCAGUUG-GCUGGCAAACAUG-----------GGGCGAGUAAACAUGGGC-------CAUGCGAGC ------....-.((((((....(((((((((((.........))))))))))-).((((...((((-----------...........)))).))-------)).)))))) ( -25.40) >DroYak_CAF1 44925 86 - 1 ------CAAC-AGCUUGUUGUAUCAAUUGACAGCAAAUAAAAUUGUCAGUUG-GCUGGCAAACAUG---------A-GGGCGAAUAAACAUGGGC-------CAUGCGAGC ------....-.((((((....(((((((((((.........))))))))))-).((((...((((---------.-...........)))).))-------)).)))))) ( -24.20) >DroMoj_CAF1 56848 91 - 1 ------CAACAAACAUGUUAAAUUCAUUGACAGCGAAUAAAAAUGUCAGUGG-GAUGCCAG------CAAAUACUGGGGCCAAAUAAAUAAGGCG-------AAUGUGAGC ------.......((((((...((((((((((...........)))))))))-)...((((------......)))).(((..........))).-------))))))... ( -20.80) >consensus ______CAAC_AGCUUGUUGUAUCAAUUGACAGCAAAUAAAAUUGUCAGUUG_GCUGGCAAACAUG___________GGGCGAAUAAACAUGGGC_______CAUGCGAGC ............((..(((((........))))).........((((((.....)))))).............................................)).... (-11.20 = -11.48 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:32 2006