| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,582,042 – 1,582,135 |
| Length | 93 |
| Max. P | 0.959642 |
| Location | 1,582,042 – 1,582,135 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.05 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -21.85 |
| Energy contribution | -22.72 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.959642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1582042 93 + 22224390 -----------CUCCACCUACAUUCUCCAUCCUGGC--CUGCUCCGUGUCAUAACUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA -----------.....................((((--(((((((((((((....)))).)))).)))))...((((......))))))))............... ( -26.90) >DroPse_CAF1 61015 101 + 1 CCUGGGUCGGGCUCCGGCUCCGGCUCUGACGCUGGCUCCGACUCCGGCUCA-----GGCGGCGGAAGCGGAAAGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA (((((((((((...(((..(((((......)))))..)))..)))))))))-----))(.((....)).)...((((......))))................... ( -43.90) >DroSec_CAF1 43563 93 + 1 -----------CUCCACCUCCAUUCUCCAUCCUGGC--CUGCUCCGUGUCAUAACUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA -----------.....................((((--(((((((((((((....)))).)))).)))))...((((......))))))))............... ( -26.90) >DroEre_CAF1 46811 87 + 1 -----------CACCAG------CCUCCGUCCUGGC--CCGCUCCGUGUCAUGGCUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA -----------..((.(------(.(((((((..((--(.((.....))...)))..).)))))).)))).((((((......)))).))................ ( -32.30) >consensus ___________CUCCACCUCCAUCCUCCAUCCUGGC__CUGCUCCGUGUCAUAACUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA ................................((((..((((((((((((......))).)))).)))))...((((......))))))))............... (-21.85 = -22.72 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:31 2006