Locus 55

Sequence ID X_DroMel_CAF1
Location 244,349 – 244,463
Length 114
Max. P 0.859476
window66

overview

Window 6

Location 244,349 – 244,463
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.79
Mean single sequence MFE -36.13
Consensus MFE -32.75
Energy contribution -32.87
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.21
Structure conservation index 0.91
SVM decision value 0.82
SVM RNA-class probability 0.859476
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 244349 114 - 22224390
CGGCAGGCUUCCAAGGAGGAGGCGA------GUGUCAGUUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUUAUUAUUGAUCAUCGCGAU
..((..((((((.....))))))((------..((((((..(((((((.(((......(((((...((((((.......))))))))))))))))))))).....))))))..))))... ( -34.50)
>DroSim_CAF1 13081 114 - 1
CGGCAGGCUUCCAAGGAGGAGGCGA------GUGUCAGUUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUUAUUAUUGAUCAUCGCGAU
..((..((((((.....))))))((------..((((((..(((((((.(((......(((((...((((((.......))))))))))))))))))))).....))))))..))))... ( -34.50)
>DroYak_CAF1 14113 120 - 1
CGGCAGGCCUCCAAAGAGGAGGCGAGUGCGAGUGUCAGGUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUAAUUAUUGAUCAUCGCGAA
..((..((((((.....))))))..))((((..(((((...(((((((.(((......(((((...((((((.......)))))))))))))))))))))......)))))..))))... ( -39.40)
>consensus
CGGCAGGCUUCCAAGGAGGAGGCGA______GUGUCAGUUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUUAUUAUUGAUCAUCGCGAU
..((..((((((.....))))))........((((((((..(((((((.(((......(((((...((((((.......))))))))))))))))))))).....))))).))).))... (-32.75 = -32.87 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:28 2006