Locus 548

Sequence ID X_DroMel_CAF1
Location 1,561,896 – 1,562,015
Length 119
Max. P 0.780711
window861

overview

Window 1

Location 1,561,896 – 1,562,015
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.88
Mean single sequence MFE -22.25
Consensus MFE -20.55
Energy contribution -20.88
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.92
SVM decision value 0.56
SVM RNA-class probability 0.780711
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1561896 119 - 22224390
GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-AUGAAAAUU
((((...((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))))))))).-......... ( -22.60)
>DroPse_CAF1 32012 119 - 1
GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-UUGAAAAUU
((((...((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))))))))).-......... ( -22.60)
>DroSec_CAF1 23528 120 - 1
GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUUCAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCAAAUGAAAAUU
((((...((((((((((.((((...((((...))))....))))..(((.......(((...((((((((....)))))))).))).....))).))))))))))))))........... ( -22.10)
>DroMoj_CAF1 26064 119 - 1
GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUGUUGCU-AUGAAAAUU
.((.(((((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))..))))))-.))...... ( -22.90)
>DroAna_CAF1 29708 119 - 1
GGAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-AUGAAAAUA
.....((((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).))))))))))..)).-......... ( -20.70)
>DroPer_CAF1 31708 119 - 1
GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-UUGAAAAUU
((((...((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))))))))).-......... ( -22.60)
>consensus
GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA_AUGAAAAUU
((((...((((((((((.((((...((((...))))....))))..(((.......(((...((((((((....)))))))).))).....))).))))))))))))))........... (-20.55 = -20.88 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:26 2006