| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,555,521 – 1,555,627 |
| Length | 106 |
| Max. P | 0.631462 |
| Location | 1,555,521 – 1,555,627 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.12 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.22 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1555521 106 - 22224390 GCAUAAAGUAUUAAGCUACUUUGCAGCAUCUUUGCAUGCAUUACCAAGGAUAAUACACAGACAAACGUCGCCGG--CCUGCUCAAGUGCCACU----------UCCACUGCCACUCCC- (((.((((((......))))))((((((....))).)))........(((.........(((....)))...((--(((.....)).)))...----------)))..))).......- ( -22.50) >DroPse_CAF1 24703 112 - 1 GCAUAAAGUAUUAAGCUACUUUGCAGCAUCUUUGCAUGCAUUACCGAGGAUAAUACACAGACAAACGUCACAGGA-CCCGUACGAGUGCCACAAGCAGUCCCCUCCACGCCCA------ ((..((((((......))))))((((((....))).)))......((((....(((...(((....)))...(..-..)))).((.(((.....))).)).))))...))...------ ( -23.70) >DroEre_CAF1 19566 106 - 1 GCAUAAAGUAUUAAGCUACUUUGCAGCAUCUUUGCAUGCAUUACCAAGGAUAAUACACAGACAAACGUCGCCGG--CCUGCUCAAGUGCCACU----------UCCACUCCCCAUACC- ((.....((((((..((....(((((((....))).))))......))..))))))...(((....))))).((--(((.....)).)))...----------...............- ( -21.80) >DroYak_CAF1 18327 91 - 1 GCAUAAAGUAUUAAGCUACUUUGCAGCAUCUUUGCAUGCAUUACCAAGGAUAAUACACAGACAAACGUCGCCGG--CCUGCUCGAGUGCCACU-------------------------- ((.....((((((..((....(((((((....))).))))......))..))))))...(((....))))).((--(((.....)).)))...-------------------------- ( -21.10) >DroAna_CAF1 22672 89 - 1 GCAUAAAGUAUUAAGCUACUUUGCAGCAUCUUUGCAUGCAUUACCAAGGAUAAUACACAGACAAACGUCGCCGAGUCCUG----AGUCCUU----------------------GU---- ((((((((((......))))))...(((....))))))).....(((((((...((.(.(((....)))...).))....----.))))))----------------------).---- ( -18.90) >DroPer_CAF1 24476 118 - 1 GCAUAAAGUAUUAAGCUACUUUGCAGCAUCUUUGCAUGCAUUACCGAGGAUAAUACACAGACAAACGUCACAGGA-CCCGUACGAGUGCCACAAGCAGUCUCCUCCACGCCCACGCCCA ((..((((((......))))))((((((....))).)))......(((((...(((...(((....)))...(..-..)))).((.(((.....))).)))))))...))......... ( -25.30) >consensus GCAUAAAGUAUUAAGCUACUUUGCAGCAUCUUUGCAUGCAUUACCAAGGAUAAUACACAGACAAACGUCGCCGG__CCUGCUCGAGUGCCACU__________UCCAC_CCCA_U____ ((((...((((((..((....(((((((....))).))))......))..))))))...(((....)))................)))).............................. (-17.05 = -17.22 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:23 2006