Locus 542

Sequence ID X_DroMel_CAF1
Location 1,548,462 – 1,548,558
Length 96
Max. P 0.820876
window854

overview

Window 4

Location 1,548,462 – 1,548,558
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 97.29
Mean single sequence MFE -32.80
Consensus MFE -30.86
Energy contribution -31.46
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.94
SVM decision value 0.68
SVM RNA-class probability 0.820876
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1548462 96 + 22224390
UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCAAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU
...((((((....))))))((((((((((....((.(((((.....))))).))...))))))....(((((.((......))))))).))))... ( -30.60)
>DroSec_CAF1 10854 96 + 1
UAUGCACCUUUGGUGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU
...(((((......)))))(((((((((((...((.(((((.....))))).))..)))))))....(((((.((......))))))).))))... ( -33.60)
>DroSim_CAF1 12624 96 + 1
UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU
...((((((....))))))(((((((((((...((.(((((.....))))).))..)))))))....(((((.((......))))))).))))... ( -34.10)
>DroEre_CAF1 12385 96 + 1
UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUGGAACCGCACUUGCCUGGCCGAUGCAGGAAGGUUUCACAAU
...((((((....))))))(((((((((((.(.((.(((((.....))))).)).))))))))((((.((((.......)))).)))).))))... ( -34.90)
>DroYak_CAF1 11083 96 + 1
UAUGCACCUUUGGGGAUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUGGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU
...(((((.....)).)))(((((((((((.(.((.(((((.....))))).)).))))))))....(((((.((......))))))).))))... ( -30.80)
>consensus
UAUGCACCUUUGGGGGUGUGUGGGCGGUUCACCGGCGAUGUUUCUGGCAUUUUCUCGAACCGCACUUGCCUUGCCGAUUCAGGAAGGUUUCACAAU
...(((((......)))))(((((((((((...((.(((((.....))))).))..)))))))....(((((.((......))))))).))))... (-30.86 = -31.46 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:19 2006