| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,547,808 – 1,547,909 |
| Length | 101 |
| Max. P | 0.844969 |
| Location | 1,547,808 – 1,547,909 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -36.30 |
| Consensus MFE | -22.97 |
| Energy contribution | -22.97 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.844969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1547808 101 + 22224390 GACUGGAGCUGGAUCUGGAACUG------------------CAUGCGGAUCUGGAUCGGGACCCCAGAAAUGCGGCUG-GCAGAACAGACAAUAGUGUUGGCCGAAUACAAUUGUUCAUC ..((((.(((.((((..((.(((------------------....))).))..)))).)).).))))......(((..-(((.............)))..)))(((((....)))))... ( -35.72) >DroSec_CAF1 10190 101 + 1 GACUGGAGCUGGAUCUGGAACUG------------------CAGGCGGAUCUGGAUCGGGACCCCAGAGAUGCGGCUG-GCAGAACAGCCAAUAAUAUUGAAUGAAUACUACUGUUCAUC ..((((.(((.((((..((.(((------------------....))).))..)))).)).).))))......(((((-......)))))...........(((((((....))))))). ( -36.50) >DroSim_CAF1 11976 101 + 1 GACUGGAGCUGGAUCUGGAACUG------------------CAUGCGGAUCUGGAUCGGGACCCCAGAGAUGCGGCUG-GCAGAACAGCCAAUAAUAUUGAAUGACUACUACUGUUCAUC ..((((.(((.((((..((.(((------------------....))).))..)))).)).).))))......(((((-......)))))........((((((........)))))).. ( -34.80) >DroEre_CAF1 11732 94 + 1 GACUGGAGCUGGAUCUGGAACUG------------------CAUGUGGAUCUGGAUCGGGACCGCAGAGACGCGGUUCUGUA----AGCCAAU-AUCUUGACCAAAUAC---UGGUCCUC .....(.(((.((((..((.(((------------------....))).))..))))((((((((......))))))))...----))))...-.....(((((.....---)))))... ( -31.90) >DroYak_CAF1 10398 113 + 1 GACUGGAGCUGGAUCUGGAACUGCAUGUGGAUCUGGAACUGCAUGUGGAUCUGGAUCGGGACCCCAGAGAUGCGGUUCUGCA----AGCCAACAAUCUUGGCCGAAUAC---UGUUCGUC ..((((.(((.((((..((.(..((((..(........)..))))..).))..)))).)).).))))...((((....))))----.(((((.....)))))(((((..---.))))).. ( -42.60) >consensus GACUGGAGCUGGAUCUGGAACUG__________________CAUGCGGAUCUGGAUCGGGACCCCAGAGAUGCGGCUG_GCAGAACAGCCAAUAAUAUUGACCGAAUAC_A_UGUUCAUC ..((((.(((.((((..((.(((......................))).))..)))).)).).))))......(((((.......)))))........((((((........)))))).. (-22.97 = -22.97 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:17 2006