Locus 54

Sequence ID X_DroMel_CAF1
Location 243,616 – 243,715
Length 99
Max. P 0.684307
window65

overview

Window 5

Location 243,616 – 243,715
Length 99
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 78.74
Mean single sequence MFE -23.53
Consensus MFE -19.16
Energy contribution -18.83
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.27
Structure conservation index 0.81
SVM decision value 0.31
SVM RNA-class probability 0.684307
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 243616 99 + 22224390
---------------------CAUUAACAUCUUUCGCAAUGCGUUUAAAAUCUAUUAUGCUGGCGUGGACUUCCACUGGCAAAACGCACUGCGCUUCUGCAUCAAUUUUUCGGCAAUCAC
---------------------..............(((.(((((((...........((((...((((....)))).))))))))))).)))((....)).................... ( -21.80)
>DroSim_CAF1 12321 120 + 1
GAAUAAUGAGUGGCUCCACUUCAUUAACAUCUUCCGCAAUGCGUUUAAAAUCUAUCAUGCUGGCGUGGACUUCCACUGGCGAAACGCACUGCACUCAUGCAUCAAUUUUUCGGCAAUCAC
...(((((((((....))).)))))).........(((.(((((((...........((((...((((....)))).))))))))))).))).....(((............)))..... ( -28.40)
>DroYak_CAF1 13327 108 + 1
------------GCUGCCCUUCAAUAAGCCCUUCUGCAAUGCAUUUAAAAUCUAUCAUGCCGACGUGGACUUCCACUGGCAAAACGCACUGUACUCCUGCAUCAAUUUUUCGGCAAUCAC
------------..((((.........((......)).(((((..............(((((..((((....)))))))))..((.....)).....))))).........))))..... ( -20.40)
>consensus
____________GCU_C_CUUCAUUAACAUCUUCCGCAAUGCGUUUAAAAUCUAUCAUGCUGGCGUGGACUUCCACUGGCAAAACGCACUGCACUCCUGCAUCAAUUUUUCGGCAAUCAC
...................................(((.(((((((...........(((((..((((....)))))))))))))))).))).....(((............)))..... (-19.16 = -18.83 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:26 2006