Locus 536

Sequence ID X_DroMel_CAF1
Location 1,531,132 – 1,531,225
Length 93
Max. P 0.986547
window845

overview

Window 5

Location 1,531,132 – 1,531,225
Length 93
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -22.94
Consensus MFE -17.09
Energy contribution -16.85
Covariance contribution -0.24
Combinations/Pair 1.07
Mean z-score -2.44
Structure conservation index 0.74
SVM decision value 2.05
SVM RNA-class probability 0.986547
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1531132 93 - 22224390
CCUGAACCAAAAUCCAAAGUCUAGAAU--------------CUAAA-------AAUCAGGAUGUGGGAUCCAGAGGCCAGGACCUGGCCACAACACAACAUAUAACACUUAGAA
.((((......((((...((((.((..--------------.....-------..)).))))...)))).....((((((...))))))...................)))).. ( -19.30)
>DroSec_CAF1 4098 93 - 1
CCUGAACCACAGUCCAAAGUCUAAAAU--------------CUGAA-------AACCAGGAUGUGGGACCCAGAGGCCAGGACCUGGCCACAACACAACAUACAACACUUAGAA
.(((..(((((.(((....((......--------------..)).-------.....))))))))....))).((((((...))))))......................... ( -22.50)
>DroSim_CAF1 3559 93 - 1
CCUGAACCACAGUCCAAAGUCUAGAAU--------------CUGAA-------AACCAGGAUGUGGGACCCAGAGGCCAGGACCUGGCCACAACACAACAUACAACACUUAGAA
.(((..(((((.(((....((......--------------..)).-------.....))))))))....))).((((((...))))))......................... ( -22.50)
>DroEre_CAF1 4068 94 - 1
CCUGCCCCAGAAUCCAAAAUCUAAAAU--------UAAAAUCUGAA-------GUCCAGGAUGUGGGAUUCAGAGGCCAGGACCUGGCCA-AACACAAU-CAC---ACUUAGAA
...................(((((...--------.....((((((-------..(((.....)))..))))))((((((...)))))).-........-...---..))))). ( -24.10)
>DroYak_CAF1 3990 113 - 1
CCUGUCCCAAAAUCCAAAUUCUGAAAUCUGCAAUCUAAAAUCUGAUCUUAUCGAUCCAGGAUGUGGGAUCCAGAGGCCAGGACCUGGCCACAACACAAC-UACACCACUUAGAA
..................((((((..((((..((((...((((((((.....))))..))))...)))).))))((((((...))))))..........-........)))))) ( -26.30)
>consensus
CCUGAACCAAAAUCCAAAGUCUAAAAU______________CUGAA_______AACCAGGAUGUGGGAUCCAGAGGCCAGGACCUGGCCACAACACAACAUACAACACUUAGAA
.(((..((...((((...........................................))))...))...))).((((((...))))))......................... (-17.09 = -16.85 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:11 2006