| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 241,559 – 241,656 |
| Length | 97 |
| Max. P | 0.683166 |
| Location | 241,559 – 241,656 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 88.05 |
| Mean single sequence MFE | -21.13 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683166 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 241559 97 + 22224390 AUCCAAUUAAUAAUAUGUUAGUAAACUGGCACGAUGACAUCGCCAGAUACACGUAAUGCA-GUCGCAUACAUACAUGUGUAUGCGUACAUAUAAGCUA .............(((((..(((..(((((...........))))).)))))))).....-(((((((((((....))))))))).)).......... ( -23.30) >DroSec_CAF1 35956 97 + 1 AUCCAAUUAAUAAUAUGUUAGUAAACUGGCACGAUGACAUCGCCAGAUAUACGUAAUGCA-GUCGCAUACAUACAUGUGUAUGUGUACAUAUAAGCUA ............((((((..(((..(((((...........)))))...)))........-..(((((((((....))))))))).))))))...... ( -21.40) >DroEre_CAF1 42049 86 + 1 AUCCAAUUAAUAAUAUGUUAGUAAACUGGCACGAUGACAACGCCAGAUACACGUAAUGCAUGACGCAUACA--CAUGUGU----------AUAAACUA ..................((((...(((((...........)))))((((((((.((((.....))))...--.))))))----------))..)))) ( -18.70) >consensus AUCCAAUUAAUAAUAUGUUAGUAAACUGGCACGAUGACAUCGCCAGAUACACGUAAUGCA_GUCGCAUACAUACAUGUGUAUG_GUACAUAUAAGCUA ..................((((...(((((...........)))))((((((((.((((.....))))......))))))))............)))) (-15.47 = -15.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:25 2006