| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,515,297 – 1,515,536 |
| Length | 239 |
| Max. P | 0.977167 |
| Location | 1,515,297 – 1,515,417 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -69.23 |
| Consensus MFE | -69.57 |
| Energy contribution | -68.47 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.28 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.977167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1515297 120 - 22224390 GGCACUCCUGCGGCUCGUUUAUGCCGCCGCUGGUGGGCGGUGGCAUGCGGAGCGGUAGCGGAGGCGUGCCCGCUUGGGUCACGGUUCCUCCUGCUGCCGUCGCCUGGCUGCCAGGACUCG .....((((((((((.(...(((((((((((....)))))))))))(((..((((((((((((((((((((....))).))))...))))).)))))))))))).))))).))))).... ( -69.30) >DroSec_CAF1 4754 120 - 1 GGCAUUCCUGCGGCUCGUUUAUGCCGCCGCUGGUGGGCGGUGGCAUGCGGAGCGGUAGCGGAGGCGUGCCCGCCUGGGUCACGGUUCCUCCCGCUGCCGUCGCCUGGCUGCCAGGACUCG .....((((((((((.(...(((((((((((....)))))))))))(((..((((((((((((((((((((....))).))))...))).)))))))))))))).))))).))))).... ( -69.40) >DroYak_CAF1 6321 120 - 1 GGCACUCCUGCGGCUCGUUUAUGCCGCCGCUGGUGGGUGGUGGCAUGCGGAGCGGUAGCGGUGGCGUGCCCGCCUGGGUCACGGCUCCACCUGCUGCCGCCGUCUGGCUGCCAGGACUCG .....(((((((((.....((((((((((((....))))))))))))((((((((((((((((((((((((....))).))))...))))).))))))))..)))))))).))))).... ( -69.00) >consensus GGCACUCCUGCGGCUCGUUUAUGCCGCCGCUGGUGGGCGGUGGCAUGCGGAGCGGUAGCGGAGGCGUGCCCGCCUGGGUCACGGUUCCUCCUGCUGCCGUCGCCUGGCUGCCAGGACUCG .....((((((((((.....(((((((((((....)))))))))))(((..((((((((((((((((((((....))).))))...))))).)))))))))))..))))).))))).... (-69.57 = -68.47 + -1.10)
| Location | 1,515,417 – 1,515,536 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 96.78 |
| Mean single sequence MFE | -44.67 |
| Consensus MFE | -43.83 |
| Energy contribution | -43.95 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.98 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1515417 119 + 22224390 CCUACUGCCGGAGGACCUUCUCGUGCUACUACUCGCUGAAGCGGCACUUCCAGGACAAGCACGAGCAGUCGGACACGCUGUAUGUGUGCGAGUUUUGCCACCGGCGGUAUCGCACCAAG ..(((((((((.((........((((..((.(.....).))..))))...((((((..(((((.((((.((....))))))...)))))..)))))))).))))))))).......... ( -46.10) >DroSec_CAF1 4874 119 + 1 CCUACUGCCGGAGGACCUUCUCGUGCUACUACUCGCUGAAGCGGCACUUCCAGGACAAGCACGAGCAGUCAGACACGCUGUAUGUGUGCGAGUUCUGCCACCGGCGGUACCGCACCAAG ..(((((((((.((........((((..((.(.....).))..))))...((((((..(((((.(((((.......)))))...)))))..)))))))).))))))))).......... ( -46.40) >DroEre_CAF1 4912 119 + 1 CCUACUGCCGCAGGACCUUCUCGUGCUACUACUCGCUGAAGCGGCACUUCCAGGACAAGCACGAACAGUCGGAUACGCUGUAUGUGUGCGAGUUCUGUCACCGGCGGUACCGCACCAAG ..((((((((...(((......((((..((.(.....).))..))))....(((((..(((((.((((.((....))))))...)))))..))))))))..)))))))).......... ( -42.60) >DroYak_CAF1 6441 119 + 1 CCUACUGCCGCAGGACCUUCUCGUGCUACUACUCGCUGAAGCGGCACUUCCAGGACAAGCACGAACAGUCGGACACGCUGUAUGUGUGCGAGUUCUGCCACCGGCGGUACCGCACCAAG ..((((((((..((........((((..((.(.....).))..))))...((((((..(((((.((((.((....))))))...)))))..))))))))..)))))))).......... ( -43.60) >consensus CCUACUGCCGCAGGACCUUCUCGUGCUACUACUCGCUGAAGCGGCACUUCCAGGACAAGCACGAACAGUCGGACACGCUGUAUGUGUGCGAGUUCUGCCACCGGCGGUACCGCACCAAG ..(((((((((.((........((((..((.(.....).))..))))...((((((..(((((.((((.((....))))))...)))))..)))))))).))))))))).......... (-43.83 = -43.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:57 2006