Locus 528

Sequence ID X_DroMel_CAF1
Location 1,515,060 – 1,515,180
Length 120
Max. P 0.998949
window828

overview

Window 8

Location 1,515,060 – 1,515,180
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.75
Mean single sequence MFE -48.06
Consensus MFE -45.36
Energy contribution -45.88
Covariance contribution 0.52
Combinations/Pair 1.10
Mean z-score -2.13
Structure conservation index 0.94
SVM decision value 3.30
SVM RNA-class probability 0.998949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1515060 120 + 22224390
CCGCCGUCUACAGCCUACACAGUCACGCCCACGGCCAUGUCCUUGGGCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAAUCUCUGCACCUCCACCUCCA
............((((((((.((...(((((((((..((((....)))).))).....((.((((.....)))).)))))))).)).)))))))).(((.....)))............. ( -47.00)
>DroSec_CAF1 4520 120 + 1
CCGCCGUCUACAGCCUACAUAGCCACGCCCACGGCCAUGUCCUUGGACACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCCA
............((((((((.((...(((((((((..((((....)))).))).....((.((((.....)))).)))))))).)).)))))))).(((.....)))............. ( -48.40)
>DroSim_CAF1 5742 120 + 1
CCGCCGUCUACAGCCUACAUAGCCACGCCCACGGUCAUGUCCUUGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCCA
............((((((((.((...(((((((((((......)))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............. ( -48.00)
>DroEre_CAF1 4561 120 + 1
CCGCCGUCUACAGCCUACAAAGCCACGCCCACGGCCAUGUCCUGGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUGUGCACCUCCACCUCCA
............(((((((..((...((((((((((........))))..((((...(((....)))...))))...)))))).))..))))))).(((.....)))............. ( -47.40)
>DroYak_CAF1 6102 120 + 1
CCGCCGUCUACAGCCUACACAGCCACGCCCACGGCCAUGUCCUGGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAAUCUCUGCACCUCCACCUCCA
............((((((((.((...((((((((((........))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............. ( -49.50)
>consensus
CCGCCGUCUACAGCCUACACAGCCACGCCCACGGCCAUGUCCUUGGCCACGCCACCUCGCCGCCGCGUCCUGGCAGCGUGGGCAGCAGUGUGGGCAGCAACCUCUGCACCUCCACCUCCA
............((((((((.((...(((((((((((......)))))..((((...(((....)))...))))...)))))).)).)))))))).(((.....)))............. (-45.36 = -45.88 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:56 2006