Locus 526

Sequence ID X_DroMel_CAF1
Location 1,514,481 – 1,514,601
Length 120
Max. P 0.885828
window825

overview

Window 5

Location 1,514,481 – 1,514,601
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -26.06
Consensus MFE -25.16
Energy contribution -25.76
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.97
SVM decision value 0.94
SVM RNA-class probability 0.885828
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1514481 120 - 22224390
UAAUGCUUGAAUGCUCUAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU
((((((((...((((((...((((((.((((.....))))(((((((.....)))))))...))))))...))))))......)))))))).....((((....))))((((....)))) ( -27.50)
>DroSec_CAF1 3965 120 - 1
UAAUGCUUGAAUGCUCUAAUAUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU
((((((((...((((((....(((((.((((.....))))(((((((.....)))))))...)))))....))))))......)))))))).....((((....))))((((....)))) ( -27.70)
>DroSim_CAF1 5187 120 - 1
UAAUGCUUGAAUGCUCUAAUAUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU
((((((((...((((((....(((((.((((.....))))(((((((.....)))))))...)))))....))))))......)))))))).....((((....))))((((....)))) ( -27.70)
>DroEre_CAF1 3990 120 - 1
UAAUGCUUGAAUGCUCAAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUAAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU
((((((((...(((((....((((((..(((.....)))(((((.....)))))........))))))....)))))......)))))))).....((((....))))((((....)))) ( -22.30)
>DroYak_CAF1 5528 120 - 1
UAAUGCUUGGAUGCUCUAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUAAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU
((((((((...((((((...((((((..(((.....)))(((((.....)))))........))))))...))))))......)))))))).....((((....))))((((....)))) ( -25.10)
>consensus
UAAUGCUUGAAUGCUCUAAUUUAGCACUAGGAACUUCCUGAAUUGGAUAAAUUUUAAUUAAUUGCUAGCAGAGAGUAGAGGUAAAGCGUUAUAUAGUUGAAUACUCGAAUACAUAUGUGU
((((((((...((((((....(((((.((((.....))))(((((((.....)))))))...)))))....))))))......)))))))).....((((....))))((((....)))) (-25.16 = -25.76 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:53 2006