Locus 524

Sequence ID X_DroMel_CAF1
Location 1,514,067 – 1,514,179
Length 112
Max. P 0.548810
window820

overview

Window 0

Location 1,514,067 – 1,514,179
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.78
Mean single sequence MFE -37.66
Consensus MFE -27.42
Energy contribution -28.10
Covariance contribution 0.68
Combinations/Pair 1.09
Mean z-score -1.70
Structure conservation index 0.73
SVM decision value 0.03
SVM RNA-class probability 0.548810
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1514067 112 - 22224390
CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC-------CGUCGAGUUUCUGGUGGCGGCGAAUGCAUGCAUGAGCCAGUUACCAACCAAACCC-CUGACGGUCUGAGAACGCGUGAUUU
..((((((...((((((.....))))))((((-------.((((.((((.((((((((((..(((....)))..))).)))))))...))))..-.)))))))).))))))......... ( -38.20)
>DroSec_CAF1 3550 112 - 1
CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC-------CGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCAUGAGCCAGUUACCAACCAAACCC-CUGACGGUCUGAGAACGCGUGAUUU
..((((((...((((((.....))))))((((-------.((((.((((.((((((((((.((((....)))).))).)))))))...))))..-.)))))))).))))))......... ( -38.10)
>DroSim_CAF1 4773 112 - 1
CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC-------CGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCAUGAGCCAGUUACCAACCAAACCC-CUGACGGUCUGAGAACGCGUGAUUU
..((((((...((((((.....))))))((((-------.((((.((((.((((((((((.((((....)))).))).)))))))...))))..-.)))))))).))))))......... ( -38.10)
>DroEre_CAF1 3574 113 - 1
CUGUUUUCCUGCUAAGAUACCUUUUUAGGAGC-------CGUCGAGUUUCUGGUGGCGGCGAAUGCAUGCAUGAGCCACUUACCAACUAAACUCGCCGGCGGUCUGAGAACGCACGAUUU
..((((((..(((......(((....))).((-------((.(((((((.((((((.(((..(((....)))..))).).)))))...))))))).)))))))..))))))......... ( -41.40)
>DroYak_CAF1 5092 120 - 1
CUCUUUUCCUGCUAAGAUACCUUUUUAGGACCGAGCUUAGGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCUUGAGCCAGUAACCAACUAAACUCGACGACGGUCUAAUAACGCGCCAUUU
(((...(((((..(((....)))..)))))..))).....(((((((((.((((.(((((....(....)....))).)).))))...)))))))))...(((..........))).... ( -32.50)
>consensus
CUGUUCUCCUGCUAAGAUACCUUUUUAGGACC_______CGUCGAGUUUCUGGUGGCGGCGUAUGCAUGCAUGAGCCAGUUACCAACCAAACCC_CUGACGGUCUGAGAACGCGUGAUUU
..((((((..(((......(((....)))...........((((.((((.((((((((((..(((....)))..))).)))))))...))))....)))))))..))))))......... (-27.42 = -28.10 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:48 2006