Locus 523

Sequence ID X_DroMel_CAF1
Location 1,513,485 – 1,513,601
Length 116
Max. P 0.987035
window819

overview

Window 9

Location 1,513,485 – 1,513,601
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.90
Mean single sequence MFE -14.44
Consensus MFE -13.34
Energy contribution -13.38
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.74
Structure conservation index 0.92
SVM decision value 2.06
SVM RNA-class probability 0.987035
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1513485 116 + 22224390
AGUUU----CUCAUUUACUUAUCGCUUUCGUUUCGUUAGAUUUUUCUAAUUAACACACGAAAGAAACCCAAAAAGAAAAACUAAACCAAUCUAACCAACCGAAAUGCAAAUUAAAAUCAC
.....----..............(((((((.((.(((((((((((((..........(....)..........))))).........)))))))).)).))))).))............. ( -16.05)
>DroSec_CAF1 2969 116 + 1
AGUUU----CUCAUUUACUUAACGCUUUCGUUUCGUUAGAUUUCCCUAAUUAAUACACGAAGGAAACCCAAAAAGAAAAACUAAACCAAUCUAACAAACCGAAAUGCAAAUUAAAGUCAC
.....----..............(((((((.((.((((((((...................((....))....((.....)).....)))))))).)).))))).))............. ( -14.40)
>DroSim_CAF1 4199 116 + 1
AGUUU----CUCAUUUACUUAACGCUUUCGUUUCGUUAGAUUUCCCUAAUUAAUACACGAAGGAAACCCAAAAAGAAAAACUAAACCAAUCUAACAAACCGAAAUGCAAAUUAAAGUCAC
.....----..............(((((((.((.((((((((...................((....))....((.....)).....)))))))).)).))))).))............. ( -14.40)
>DroEre_CAF1 2982 116 + 1
AGUUU----AUCAUUUACUUACCGCUUUCGUUUCGUUAGAUUUCCCUAAUUAACAUGCGAAAGAAACCCAAAAAGAAAACCUAAACCAGUCUAACAAACCGAAAUGCAAAUUAAAAUCAC
.....----..............(((((((.((.((((((((...............(....)..........((.....)).....)))))))).)).))))).))............. ( -14.60)
>DroYak_CAF1 4515 114 + 1
AGUUUUAUCAUCAUUUACUUACCGCUUUCGUUUCGUUAGAUUUCCCUAAUUAACUCGCGAAAGAAACCCAAAAA------CUAAACCAAUCUAACCAACCGAAAUGCAAAUUAAAAUCAC
.......................(((((((.((.((((((((............(..(....)..)........------.......)))))))).)).))))).))............. ( -12.73)
>consensus
AGUUU____CUCAUUUACUUAACGCUUUCGUUUCGUUAGAUUUCCCUAAUUAACACACGAAAGAAACCCAAAAAGAAAAACUAAACCAAUCUAACAAACCGAAAUGCAAAUUAAAAUCAC
.......................(((((((.((.((((((((...............(....)..........((.....)).....)))))))).)).))))).))............. (-13.34 = -13.38 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:47 2006