Locus 52

Sequence ID X_DroMel_CAF1
Location 238,858 – 238,954
Length 96
Max. P 0.938478
window63

overview

Window 3

Location 238,858 – 238,954
Length 96
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -32.22
Consensus MFE -17.99
Energy contribution -17.52
Covariance contribution -0.47
Combinations/Pair 1.24
Mean z-score -2.09
Structure conservation index 0.56
SVM decision value 1.27
SVM RNA-class probability 0.938478
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 238858 96 - 22224390
UCUUGGUGGUCUGAUCCGCUUGGGAUCUUUGAAAUUUGUAAUACGCGCAACCGCAAAUGAUGCAAAUUUCCUUAGAGAUUGCCGCUGAGAUUAAGC-----------------
(((..(((((..(((((.....)))))...((((((((((.((.(((....)))...)).))))))))))..........)))))..)))......----------------- ( -29.70)
>DroPse_CAF1 45184 102 - 1
UGGUGGUGGUCUUGCUUCCAUAUUCUGGAUGGGAUUUGCAUUACGC-CAGCCGCAAAUGAUGCAAAUUUCCUUGGAGAUUGCCGCUAAGAUUACGC----------CCGGAAG
((((((..(((((...((((.....)))).(..((((((((((.((-.....))...))))))))))..)....)))))..)))))).........----------....... ( -34.00)
>DroSec_CAF1 33340 96 - 1
UCUUGGUGGUCUGAUCCGCUUGGGAUCUUUGAGAUUUGUAAUACGCGCAACCGCAAAUGAUGCAAAUUUCCUUACAGAUCGCCGCUAAGAUUAAGC-----------------
((((((((((..(((((.....))))).....(((((((((...(((....)))....((........)).)))))))))))))))))))......----------------- ( -31.00)
>DroEre_CAF1 39168 96 - 1
UCUUGGUGGUCUGAUCCGCUUGGGAUCUUUGAGAUUUGUAAUACGCGCAGCCGCAAAUGAUGCAAAUUUCCUUAGAGAUUGCCGCUAAGAUUAAGC-----------------
((((((((((..(((((.....)))))...((((((((((.((.(((....)))...)).))))))))))..........))))))))))......----------------- ( -30.30)
>DroAna_CAF1 49487 108 - 1
CCUCGGUGGUCUGAUAUCU-----CUCCAUGGGAUUUGCAUUACGCGCAGCCGCAAAUGAUGCAAAUUUCCUUACAGAUUGCCGCCAAGAUUACGAGGCUCAGAGACCAGAAG
.(((((..(((((...(((-----(.....))))(((((((((.(((....)))...)))))))))........)))))..))(((..(....)..)))...)))........ ( -34.30)
>DroPer_CAF1 45115 102 - 1
UGGUGGUGGUCUUGCUUCCAUAUUCUGGAUGGGAUUUGCAUUACGC-CAGCCGCAAAUGAUGCAAAUUUCCUUGGAGAUUGCCGCUAAGAUUACGC----------CCGGAAG
((((((..(((((...((((.....)))).(..((((((((((.((-.....))...))))))))))..)....)))))..)))))).........----------....... ( -34.00)
>consensus
UCUUGGUGGUCUGAUCCCCUUGGGAUCUAUGAGAUUUGCAAUACGCGCAGCCGCAAAUGAUGCAAAUUUCCUUAGAGAUUGCCGCUAAGAUUAAGC_________________
...((((((((((.................((((((((((.((.(((....)))...)).))))))))))....))))))))))............................. (-17.99 = -17.52 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:23 2006