Locus 519

Sequence ID X_DroMel_CAF1
Location 1,502,698 – 1,502,806
Length 108
Max. P 0.996509
window803

overview

Window 3

Location 1,502,698 – 1,502,806
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 88.98
Mean single sequence MFE -28.68
Consensus MFE -23.94
Energy contribution -25.34
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.83
SVM decision value 2.71
SVM RNA-class probability 0.996509
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1502698 108 + 22224390
ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUUCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA
...((((((((((((.((((((((((....)))))))))))))))..........)))).))).((((((.((.(((....))))).))))))............... ( -29.20)
>DroSec_CAF1 27411 108 + 1
ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAAUAUUCAUCACA
...((((((((((((.((((((((((....))))))))))))))))..........))).))).((((((.((.(((....))))).))))))............... ( -28.70)
>DroSim_CAF1 11937 108 + 1
ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAAUAUCCAUCACA
........(((((((.((((((((((....)))))))))))))))))..........((.....((((((.((.(((....))))).)))))).......))...... ( -28.80)
>DroEre_CAF1 31770 93 + 1
UCGAAUCCGAUUCGGACUCGGAGUCGAAUUCGAAUUUGAGCCGAGUUCCCCACC---------------UGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA
((((((.((((((.......)))))).)))))).(((((((((((((.(.(...---------------.).).)))))).))))))).................... ( -25.10)
>DroYak_CAF1 3269 108 + 1
ACGAAUCCGAUUCGGACUCGGAUUCGAAUUCGAAUUUGAGCCGCGUUCCCCAUCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA
.(((((((((.......))))))))).....((((((..((((((.........))))))....((((((..........))))))))))))................ ( -31.60)
>consensus
ACAAAUCCGAUUCGGACUCGGAUUCGAUAUCGAAUUUGAGCCGAGUUUCCCACCUGCGGCAUUAUGAACUGUGCAAUUCGAGUUCAAAGUUCAACAACAACCAUCACA
........(((((((.((((((((((....))))))))))))))))).................((((((.((.(((....))))).))))))............... (-23.94 = -25.34 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:33 2006