Locus 518

Sequence ID X_DroMel_CAF1
Location 1,502,338 – 1,502,436
Length 98
Max. P 0.798241
window802

overview

Window 2

Location 1,502,338 – 1,502,436
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 98.16
Mean single sequence MFE -13.14
Consensus MFE -11.26
Energy contribution -11.46
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.86
SVM decision value 0.61
SVM RNA-class probability 0.798241
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1502338 98 + 22224390
CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGAAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA
.((((((((...(((((((...............((((..........))))..(((....))).....)))))))...)))).)))).......... ( -12.70)
>DroSec_CAF1 27055 98 + 1
CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGUAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA
.((((((((...((((((................((((..........))))..((((........))))))))))...)))).)))).......... ( -12.00)
>DroSim_CAF1 11580 98 + 1
CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGUAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA
.((((((((...((((((................((((..........))))..((((........))))))))))...)))).)))).......... ( -12.00)
>DroEre_CAF1 31403 98 + 1
CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGAAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA
.((((((((...(((((((...............((((..........))))..(((....))).....)))))))...)))).)))).......... ( -12.70)
>DroYak_CAF1 2913 98 + 1
CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAUAAAUCACAAUCAAAAUCGAAAUCGAGAGCGAGCGAAAAAAUGAACGCAUACAAAUUGGA
.((((((((...(((((((...(((.........(((((........)))))..(((....))))))..)))))))...)))).)))).......... ( -16.30)
>consensus
CAUGUUUCAAAAUUUUGCUAAACUUAACAAACAAUUGAAAAAUCACAAUCAAAAUCGAAAUCGAAAUCGAGCGAAAAAAUGAACGCAUACAAAUUGGA
.((((((((...((((((................((((..........))))..((((........))))))))))...)))).)))).......... (-11.26 = -11.46 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:32 2006