Locus 517

Sequence ID X_DroMel_CAF1
Location 1,498,980 – 1,499,075
Length 95
Max. P 0.988672
window801

overview

Window 1

Location 1,498,980 – 1,499,075
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 88.38
Mean single sequence MFE -25.18
Consensus MFE -21.63
Energy contribution -21.63
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.16
Structure conservation index 0.86
SVM decision value 2.13
SVM RNA-class probability 0.988672
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1498980 95 + 22224390
AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUUUUCCCC----ACCUUGUCGUCAGGUAAACUGACGACAAAUGCUA---CAACUACUACAACA
.....(((((...(((((....))...(((....)))........))----)..((((((((((.....))))))))))......---........))))). ( -24.90)
>DroGri_CAF1 15416 93 + 1
-ACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCU----AA-UUGUCGUCAGGUCAACUGACGACAAAUGCUA---CAACUUCUACAACA
-....(((((....((......(((..(((....)))..........----..-((((((((((.....)))))))))).)))..---...))...))))). ( -24.00)
>DroSec_CAF1 23769 92 + 1
AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUUUUCCCC----ACCUUGUCGUCAGGUAAACUGACGACAAAUGCUA---CAACU---ACAACA
.....(((((..((((((.........(((....)))..........----...((((((((((.....))))))))))..))).---)))..---))))). ( -26.20)
>DroWil_CAF1 14503 92 + 1
AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCC----AACUUGUCGUCAGGUAAACUGACGACAAAUGCAA---CAACUACUAUA---
.....(((((..((((((....))...(((....)))........))----)).((((((((((.....))))))))))..))))---)..........--- ( -26.00)
>DroMoj_CAF1 15187 92 + 1
-AAUCGUUGUACUUGGGCUAAUGCGACGUUUUCUGACUUUCUUUCCU----ACCUUGUCGUCAGGUCAACUGACGACAAAUGCUA---CAACUUCUACAA--
-....((((((...((((....))...(((....)))..........----.))((((((((((.....))))))))))....))---))))........-- ( -25.10)
>DroAna_CAF1 34032 99 + 1
AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCCCAAAAAAUUGUCGUCAGGUAAACUGACGACAAAUGCUUCUUCAACU---UCAACA
.....((((...((((((....))...(((....))).........))))....((((((((((.....))))))))))..............---.)))). ( -24.90)
>consensus
AACUCGUUGUCCUUGGGCUAAUGCGACGUUUUCUGACUUUCUUCCCC____AACUUGUCGUCAGGUAAACUGACGACAAAUGCUA___CAACU_CUACAACA
.....((((.....((((....))...(((....))).......))........((((((((((.....)))))))))).........)))).......... (-21.63 = -21.63 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:31 2006