Locus 515

Sequence ID X_DroMel_CAF1
Location 1,494,666 – 1,494,762
Length 96
Max. P 0.551574
window799

overview

Window 9

Location 1,494,666 – 1,494,762
Length 96
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 85.48
Mean single sequence MFE -32.43
Consensus MFE -24.43
Energy contribution -26.77
Covariance contribution 2.33
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.75
SVM decision value 0.04
SVM RNA-class probability 0.551574
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1494666 96 - 22224390
UUGCUAAACACUCUGCGGCUGGCAGAUGAGCUGAAGCUGGAAAGCAGCGAGUUAAUUAAUUUUGCGUAGUUCAUCAAACAAGCCUGGCGGAGCGGC-----------
........(.((((((((((....(((((((((..(((....))).(((((.........))))).))))))))).....))))..)))))).)..----------- ( -35.20)
>DroSec_CAF1 19343 96 - 1
UUGCUAAACACUCUGCGGCUGGCAGAUGAGCUGGAGCUGGAAAGCAGCGAGUUAAUUAAUUUUGCGUAGUUCAUCAAACAAGCCUGGCGGAGCGGC-----------
........(.((((((((((....(((((((((..(((....))).(((((.........))))).))))))))).....))))..)))))).)..----------- ( -35.20)
>DroEre_CAF1 23752 100 - 1
UUGCUAAACACUCUGCGGCUGGCAGAUGAGC------UGGAAAGCAGCGAGUUAAUUAAUUUUGCGGAGUUCAUCAAGCAAA-CUGGCGUAGCGGCGAUUGGGCUUG
..(((...((.((.((.((((.(.(((((((------(....))).(((((.........))))).....)))))..((...-...))))))).)))).)))))... ( -26.90)
>consensus
UUGCUAAACACUCUGCGGCUGGCAGAUGAGCUG_AGCUGGAAAGCAGCGAGUUAAUUAAUUUUGCGUAGUUCAUCAAACAAGCCUGGCGGAGCGGC___________
........(.((((((((((....(((((((((..(((....))).(((((.........))))).))))))))).....))))..)))))).)............. (-24.43 = -26.77 +   2.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:29 2006