| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,491,949 – 1,492,063 |
| Length | 114 |
| Max. P | 0.592012 |
| Location | 1,491,949 – 1,492,063 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.49 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -16.68 |
| Energy contribution | -16.35 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1491949 114 - 22224390 UGAACUCCACCAGGGCGUGCAGGUCCAUGAAGUUGACAUCCUGCAGCAGUAUGACCGGGUGUUUGCAGGGUGUGCUCUGUAAUUUGAGUGGUGGUUUUAGU---CAGUCAGAUAUGU (((...(((((.((((......)))).........(((((((((((((.(.......).)).)))))))))))((((........)))))))))......)---))........... ( -36.10) >DroVir_CAF1 32357 93 - 1 UGAAUUCGACCAGCGAGUGCAGAUCCAUGAAAUUGACAUCUUGCAGCAAUAUGACCGGAUGUUUGCAGGGUGUGCUCUGAAAAAA-------------GACAACAA----------- ...(((((.....)))))(((.((((.((.....(((((((.(((......)).).)))))))..)))))).)))(((......)-------------))......----------- ( -22.20) >DroPse_CAF1 81042 90 - 1 UGAACUCCACCAACGAAUGCAGAUCCAUGAAGUUCACAUCCUGCAGUAGUAUAACAGGAUGUUUGCAGGGUGUGCUCUGAAAAGA-------------GAU---GA----------- .(((((.((..................)).)))))(((((((((((................))))))))))).((((....)))-------------)..---..----------- ( -23.86) >DroGri_CAF1 5882 90 - 1 UGAAUUCGACCAGCGAGUGCAGAUCCAUAAAGUUAACAUCUUGCAGCAGUAUGACGGGAUGUUUGCAGGGUGUGCUCUGCAAAGA-------------UCC---AA----------- ((.(((((.....))))).))((((..........((((((((((......)).))))))))((((((((....)))))))).))-------------)).---..----------- ( -27.50) >DroWil_CAF1 6378 90 - 1 UGAACUCAACUAGAGAAUGCAGAUCCAUGAAAUUGACAUCUUGCAGCAAUAUGACAGGGUGUUUACAGGGUGUGCUCUACAAAAA-------------CAA---AA----------- ....(((.....)))...(((.((((.((.....(((((((((((......)).)))))))))..)))))).)))..........-------------...---..----------- ( -22.70) >DroMoj_CAF1 4857 90 - 1 UGAACUCCACCAGCGAGUGCAGAUCCAUGAAAUUGACAUCUUGCAGCAGGAUGACCGGGUGUUUGCAGGGUGUGCUCUGUGGCGA-------------AAC---AA----------- ....(.((((.....((.(((.((((.((.....(((((((.(((......)).).)))))))..)))))).))).)))))).).-------------...---..----------- ( -23.90) >consensus UGAACUCCACCAGCGAGUGCAGAUCCAUGAAAUUGACAUCUUGCAGCAGUAUGACCGGAUGUUUGCAGGGUGUGCUCUGAAAAGA_____________AAC___AA___________ ..........(((.....(((.((((.((.....(((((((.(((......)).).)))))))..)))))).))).)))...................................... (-16.68 = -16.35 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:28 2006