Locus 513

Sequence ID X_DroMel_CAF1
Location 1,483,334 – 1,483,429
Length 95
Max. P 0.624576
window797

overview

Window 7

Location 1,483,334 – 1,483,429
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 84.67
Mean single sequence MFE -18.85
Consensus MFE -12.79
Energy contribution -12.85
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.67
Structure conservation index 0.68
SVM decision value 0.19
SVM RNA-class probability 0.624576
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1483334 95 - 22224390
CUAAUUAAAAUAAUGCGCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGCACAAUUGCGACGCCAAGUGCUGGGCAAGAUGGGUUG
.............(((((((((...(((.....)))..)))...))))))..((((((......))))))(((........)))........... ( -24.10)
>DroVir_CAF1 30333 77 - 1
CUAAUUAAAAUAAUGCGCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCACAAGG-CGUGCACAAUUGCGACGCCGAGAA-----------------
.............(((..((((...(((.....)))..))))...)))...((-((((((....))).))))).....----------------- ( -17.30)
>DroPse_CAF1 79858 79 - 1
CUAAUUAAAAUAAUGCUCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGAACAAUUGCGACGCCAAGUAC----------------
.............((((..((.................(((......)))..(((((((....)))))))))..)))).---------------- ( -17.00)
>DroPer_CAF1 80254 79 - 1
CUAAUUAAAAUAAUGCUCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGAACAAUUGCGACGCCAAGUAC----------------
.............((((..((.................(((......)))..(((((((....)))))))))..)))).---------------- ( -17.00)
>consensus
CUAAUUAAAAUAAUGCGCUGCAGUUAAUUAAAUAUUUAUGCAUAGGCGCAAAGUCGCGAACAAUUGCGACGCCAAGUAC________________
.(((((((.....(((...))).)))))))..............(((.....((((((......)))))))))...................... (-12.79 = -12.85 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:27 2006