| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,473,258 – 1,473,350 |
| Length | 92 |
| Max. P | 0.917447 |
| Location | 1,473,258 – 1,473,350 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 85.00 |
| Mean single sequence MFE | -33.37 |
| Consensus MFE | -24.22 |
| Energy contribution | -26.00 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1473258 92 + 22224390 AUAUGGUAACAGGAAGGGGAAGAGAGCGGGAGAACGGGUGAUUGGGAGAACGGUUGAACGAGAGGGGGGAGCCCUAGCUCUCU--CUCUCGUGG ...............(((..(((((((.......((..((((((......))))))..))...((((....)))).)))))))--..))).... ( -31.30) >DroSec_CAF1 8647 92 + 1 AUAUGGCAACAGGAAGGGGUAGAGAGCGGGAGAACGGGUGAUCGGGAGAACGGUUGAACGGGAGGGGGGAGCCCUAGCUCUCU--CUCUCGCGG ...((....)).(..((((.(((((((.......((..((((((......))))))..))...((((....)))).)))))))--))))..).. ( -34.60) >DroEre_CAF1 9783 87 + 1 AUAUGGCAACAGGAAGGGGAAGAGAGCGGGAGAACCGUCGAUCAGGGGAACGG-------GAGGGGGGGAGCCCUAGCUCUCUCUCUCUCGCGG ...((....))..........((..((((.....))))...)).......(((-------((((((((((((....)))))))))))))))... ( -34.20) >consensus AUAUGGCAACAGGAAGGGGAAGAGAGCGGGAGAACGGGUGAUCGGGAGAACGGUUGAACGGGAGGGGGGAGCCCUAGCUCUCU__CUCUCGCGG ...((....)).((.(((..(((((((.......((..((((((......))))))..))...((((....)))).)))))))..))))).... (-24.22 = -26.00 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:22 2006