Locus 51

Sequence ID X_DroMel_CAF1
Location 236,632 – 236,728
Length 96
Max. P 0.581743
window62

overview

Window 2

Location 236,632 – 236,728
Length 96
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 87.30
Mean single sequence MFE -30.20
Consensus MFE -26.99
Energy contribution -26.88
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.89
SVM decision value 0.10
SVM RNA-class probability 0.581743
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 236632 96 - 22224390
C-UUGUGUUCCUUGGCUGCUGUCUGCAGGGUCUUCUGUUUUUAGUCUUGUGGAUAUGCAGUC-GCAGCACAGAAAGAAAUACAGCUACAGU-----------UUUGCAA
.-(((((((...(((((((((((..(((((.((.........)))))))..)))).))))))-).)))))))...........((......-----------...)).. ( -29.30)
>DroSec_CAF1 31300 97 - 1
CCCUGUGAUCCUUGGCUGCUGUCUGCAGGGUCUUCUGUUUUUAGUCUUGUGGAUAUGCAGUC-GCAGCACAGAAAGAAAUACAGCUACAGU-----------UUUGCAA
..(((((.....(((((((((((..(((((.((.........)))))))..)))).))))))-)...)))))...........((......-----------...)).. ( -29.90)
>DroEre_CAF1 32552 109 - 1
CCCUGUGAUCCUUGGCUGCUGUCUGCAGGGUCUUCUGUUUUUAGCCUUCUGGAUAUGCAGUCUGCAGCACAGGAAGAAAUACAGCUACAGCUCGGAUUGAUAUUUGCAG
..(((..(((((..(((((.(.(((((..((((...((.....)).....)))).))))).).)))))..)))).......((((....))).).........)..))) ( -31.40)
>consensus
CCCUGUGAUCCUUGGCUGCUGUCUGCAGGGUCUUCUGUUUUUAGUCUUGUGGAUAUGCAGUC_GCAGCACAGAAAGAAAUACAGCUACAGU___________UUUGCAA
..(((((......(((((((((((((((((.((.........))))))))))))).)))))).....)))))...........((....................)).. (-26.99 = -26.88 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:22 2006