Locus 509

Sequence ID X_DroMel_CAF1
Location 1,470,996 – 1,471,091
Length 95
Max. P 0.988094
window789 window790

overview

Window 9

Location 1,470,996 – 1,471,091
Length 95
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 97.94
Mean single sequence MFE -36.30
Consensus MFE -33.82
Energy contribution -33.93
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.79
Structure conservation index 0.93
SVM decision value 0.27
SVM RNA-class probability 0.662695
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1470996 95 + 22224390
GCGUGUGCGUGCUAGCCAUCUGU--GUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGCCGCACUGCAAUUGUUGCUGCCACA
..(((.(((.((.(((.((.(((--(((((....(((((((........)))))))((((((....))).)))))))).))))).))))))))))). ( -34.90)
>DroSec_CAF1 6447 97 + 1
GCGUGUGCGUGCUAGCCAUCUGUGUGUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGUCGCACUGCAAUUGUUGCUGCCACA
..(((.(((.((.(((.((.((((.(((((((..(((((((........)))))))(((.....)))....))))))))))))).))))))))))). ( -37.70)
>DroEre_CAF1 7466 97 + 1
GCGUGUGCGUGCUAGCCAUCUGUGUGUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGCCGCACUGCAAUUGUUGCUGCCACA
..(((.(((.((.(((.((..(((((.(((((..(((((((........)))))))(((.....))).))))))))))....)).))))))))))). ( -36.30)
>consensus
GCGUGUGCGUGCUAGCCAUCUGUGUGUGCGACUGGCCGACAUUCAAGGUUGUCGGCGCAUAACUUGUUGUUGCCGCACUGCAAUUGUUGCUGCCACA
..(((.(((.((.(((.((.((((.(((((....(((((((........)))))))((((((....))).)))))))))))))).))))))))))). (-33.82 = -33.93 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 1,470,996 – 1,471,091
Length 95
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 97.94
Mean single sequence MFE -34.83
Consensus MFE -34.72
Energy contribution -34.50
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.81
Structure conservation index 1.00
SVM decision value 2.11
SVM RNA-class probability 0.988094
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1470996 95 - 22224390
UGUGGCAGCAACAAUUGCAGUGCGGCAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCAC--ACAGAUGGCUAGCACGCACACGC
(((((((((....(((...((((((((((.....))).((.(((((((........))))))))))))))))--...))).))).)).))))..... ( -35.30)
>DroSec_CAF1 6447 97 - 1
UGUGGCAGCAACAAUUGCAGUGCGACAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCACACACAGAUGGCUAGCACGCACACGC
(((((((((..((.(((..((((((((((.....))).((.(((((((........))))))))))))))))...))).))))).)).))))..... ( -34.90)
>DroEre_CAF1 7466 97 - 1
UGUGGCAGCAACAAUUGCAGUGCGGCAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCACACACAGAUGGCUAGCACGCACACGC
(((((((((..((.(((..((((((((((.....))).((.(((((((........))))))))))))))))...))).))))).)).))))..... ( -34.30)
>consensus
UGUGGCAGCAACAAUUGCAGUGCGGCAACAACAAGUUAUGCGCCGACAACCUUGAAUGUCGGCCAGUCGCACACACAGAUGGCUAGCACGCACACGC
(((((((((..((.(((..((((((((((.....))).((.(((((((........))))))))))))))))...))).))))).)).))))..... (-34.72 = -34.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:21 2006