Locus 508

Sequence ID X_DroMel_CAF1
Location 1,468,342 – 1,468,435
Length 93
Max. P 0.913444
window788

overview

Window 8

Location 1,468,342 – 1,468,435
Length 93
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 67.11
Mean single sequence MFE -31.07
Consensus MFE -16.83
Energy contribution -16.73
Covariance contribution -0.09
Combinations/Pair 1.50
Mean z-score -1.72
Structure conservation index 0.54
SVM decision value 1.09
SVM RNA-class probability 0.913444
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1468342 93 - 22224390
GCCGCUGC--CCUCUGCCAGUGUG---------CGUGUGUAUUGGUGUGUGCGCGAGUGUGUGCGUCUGCCCAAUUGAAUCAGAGAAUUCGCUGUGCACCAGUG
(((((((.--.......))))).)---------).....((((((((..((.((((((.(.((..((.........))..)).)..))))))))..)))))))) ( -28.40)
>DroPse_CAF1 61512 93 - 1
GUCGCUGCUGCUGCUGCCACACUCUCACACACAGACACACACAGGCCUACGUGUGUGUGUGUGUGUCUGCCCAAUUGAAUCAGAGAAUA-------UAUC----
((.((.((....)).)).))..(((((((((((.((((((((........)))))))).))))))).....(....).....))))...-------....---- ( -32.00)
>DroPer_CAF1 61504 93 - 1
GUCGCUGCUGCUGCUGCCACACUCUCACACACAGACACACACAGGCCUACGUGUGCGUGUGUGUGUCUGCCCAAUUGAAUCAGAGAAUA-------UAUC----
((.((.((....)).)).))..((((.....((((((((((((.(((.....).)).))))))))))))..(....).....))))...-------....---- ( -32.80)
>consensus
GUCGCUGCUGCUGCUGCCACACUCUCACACACAGACACACACAGGCCUACGUGUGAGUGUGUGUGUCUGCCCAAUUGAAUCAGAGAAUA_______UAUC____
...((.((....)).))..............((((((((((((.((........)).))))))))))))................................... (-16.83 = -16.73 +  -0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:19 2006