| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,451,242 – 1,451,351 |
| Length | 109 |
| Max. P | 0.782402 |
| Location | 1,451,242 – 1,451,351 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.47 |
| Mean single sequence MFE | -19.83 |
| Consensus MFE | -9.62 |
| Energy contribution | -9.73 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1451242 109 - 22224390 UCUGCGACUAUUUCGCUGCCAACGCCGGCUGCGCUGCCUGC----CCCUGCC-ACCGCCCCUGCCGCAGCCCCUC----ACCCA--GCCGCAUUUUACAUAAAUCUUCUUUUCAAAAAAA ..((((.((.....((.(((......))).))(((((..((----....((.-...))....)).))))).....----....)--).))))............................ ( -23.20) >DroWil_CAF1 149220 110 - 1 UCUGCGACUAUUUCGCUGUCGCCACAGGCAGCGCUGCCCACUUACCCUUACCCACCAGA----------CUUCUCUUCUACUCUGGAGCGCAUUUUACAUAAAUCUUCUUUUCAAAAAAA ..((((.((....(((((((......))))))).....................(((((----------............)))))))))))............................ ( -22.10) >DroAna_CAF1 68519 89 - 1 UCUGCGACUAUUUCGCUGCCGACGCCAGUGGCA-UGCCCCC----CC-UUCU-UACACCG----------------------CU--GCCGCAUUUUACAUAAAUCUUCUUUUCAAAAAAA ...((((.....))))...........((((((-.((....----..-....-......)----------------------))--)))))............................. ( -14.19) >consensus UCUGCGACUAUUUCGCUGCCGACGCCGGCAGCGCUGCCCAC____CC_UACC_ACCACC__________C__CUC____AC_CU__GCCGCAUUUUACAUAAAUCUUCUUUUCAAAAAAA ..(((((.....))((((((......)))))).........................................................)))............................ ( -9.62 = -9.73 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:18 2006