| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,437,544 – 1,437,636 |
| Length | 92 |
| Max. P | 0.638294 |
| Location | 1,437,544 – 1,437,636 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 94.20 |
| Mean single sequence MFE | -20.61 |
| Consensus MFE | -20.13 |
| Energy contribution | -20.13 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1437544 92 - 22224390 UACAAAACGCUUUUCUUUCCCUCUUCUCGAAAGGCUGUGCACACAGCUUCGAUGUCGAUGUCGAUGUCUUCCCCUUGAAGCCGCGCCACCCC ........(((((((.............))))))).((((.....((((((((((((....)))))))........))))).))))...... ( -20.82) >DroSec_CAF1 42269 88 - 1 UACAAAACGCUUUUCUUUCCCUCUUCUCGAAAGGCUGUGCACACAGCUUCGAUGUCGAUGUCGAUGUCUUCCCCUUGAAGCCGCGCCC---- ........(((((((.............))))))).((((.....((((((((((((....)))))))........))))).))))..---- ( -20.82) >DroEre_CAF1 39251 90 - 1 UACAAAACGCUUUUCUUUCCCUCUUCUCGAAAGGCUGUGCACACAGCUUCGAUGUCGAUGUCGAUGUCUUCCCCUCGAAGCCGC--CACCCC ........(((((.(((((.........)))))(((((....)))))...(((((((....)))))))........)))))...--...... ( -20.20) >consensus UACAAAACGCUUUUCUUUCCCUCUUCUCGAAAGGCUGUGCACACAGCUUCGAUGUCGAUGUCGAUGUCUUCCCCUUGAAGCCGCGCCACCCC ........(((((.(((((.........)))))(((((....)))))...(((((((....)))))))........)))))........... (-20.13 = -20.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:14 2006