Locus 502

Sequence ID X_DroMel_CAF1
Location 1,434,404 – 1,434,508
Length 104
Max. P 0.920733
window779

overview

Window 9

Location 1,434,404 – 1,434,508
Length 104
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 95.57
Mean single sequence MFE -39.70
Consensus MFE -35.39
Energy contribution -35.83
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.68
Structure conservation index 0.89
SVM decision value 1.14
SVM RNA-class probability 0.920733
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1434404 104 + 22224390
CACUUGUACGCCUUCAUACCCACACCCUUGCAAUGGCCAUCGCGUGAGUAUGUGUGUGAGUGCAUAGGUGUGU--GUGUGCGGCUGACUAUUCAGUUUGUGCGCUA
.....(((((((..(((((.((((((..((((.(.(((((.((....))..))).)).).))))..)))))).--))))).))).((((....)))).)))).... ( -38.10)
>DroSec_CAF1 39158 104 + 1
CACUUGUACGCCUUCAUACCCACACCCUUGCAGUGGCCAUCGCAUGAGU--GUGUGUGAGUGCAUAGGUGUGUGUGUGUGCGACUGACUAUUCAGUUUGUGCGCUA
.....((((((...(((((.((((((..((((.(.((((.(((....))--))).)).).))))..)))))).))))).))((((((....)))))).)))).... ( -40.50)
>DroSim_CAF1 30914 104 + 1
CACUUGUACGCCUUCAUACCCACACCCUUGCAGUGGCCAUCGCAUGAGU--GUGUGUGAGUGCAUAGGUGUGUGUGUGUGCGACUGACUAUUCAGUUUGUGCGCUA
.....((((((...(((((.((((((..((((.(.((((.(((....))--))).)).).))))..)))))).))))).))((((((....)))))).)))).... ( -40.50)
>consensus
CACUUGUACGCCUUCAUACCCACACCCUUGCAGUGGCCAUCGCAUGAGU__GUGUGUGAGUGCAUAGGUGUGUGUGUGUGCGACUGACUAUUCAGUUUGUGCGCUA
.....((((((...(((((.((((((..((((.(.((...(((........))).)).).))))..)))))).))))).))((((((....)))))).)))).... (-35.39 = -35.83 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:11 2006