Locus 501

Sequence ID X_DroMel_CAF1
Location 1,431,160 – 1,431,263
Length 103
Max. P 0.813373
window778

overview

Window 8

Location 1,431,160 – 1,431,263
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -36.30
Consensus MFE -32.67
Energy contribution -34.00
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.90
SVM decision value 0.66
SVM RNA-class probability 0.813373
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1431160 103 - 22224390
AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAU
...........((((((.....))))))..(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))) ( -37.20)
>DroSec_CAF1 35891 103 - 1
AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAU
...........((((((.....))))))..(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))) ( -37.20)
>DroEre_CAF1 32701 97 - 1
AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCU------GAGACUGAGGCUUCAGCUUCAGAAUUUGGCGCUGAU
...........((((((.....))))))..(((((((((....((.(((((......))))------).))(((((((....))))))).....))))))))) ( -34.50)
>consensus
AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAU
...........((((((.....))))))..(((((((((.(.(((.(((((......))))).))).)...(((((((....))))))).....))))))))) (-32.67 = -34.00 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:10 2006