| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,068,584 – 13,068,679 |
| Length | 95 |
| Max. P | 0.957515 |
| Location | 13,068,584 – 13,068,679 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -14.02 |
| Energy contribution | -15.02 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13068584 95 - 22224390 UAAAUGGGCAGCAACAAAAAUUAUGUCAAAAUAUGGGCUUACAUACA------UAUAUUGGGAAAUCCCAGGUUUUC---UUACAAUUGCUCCCUCCCUUUCUA .....(((.(((((................(((((..........))------))).(((((....)))))......---......)))))))).......... ( -19.00) >DroSec_CAF1 18781 84 - 1 UAAAUGGGCAGCA---------------AAAUAUGGGCUUACAUACAUACA--UAUAUUGGGAAAUCCCAGGUCUUC---UCACAAUUGCUCCCUCCCUUUCUA .....(((.((((---------------(..((((......))))......--....(((((....)))))......---......)))))))).......... ( -19.10) >DroSim_CAF1 20000 103 - 1 UAAAUGGGCAGCAACAGAAAUUAUGUCAAAAUAUGCGCUUACAUACAUAUAUAUAUAUUGGGAAAUCCCAGAUCUUC-UCUCACAAUUGCUCCCUCUCUUUUUA .....(((.(((((.......(((((.....((((......)))).....)))))..(((((....)))))......-........)))))))).......... ( -18.40) >DroYak_CAF1 19201 90 - 1 UAAAUGGGCAGCAACGAAAUUUAUGUCAAAAUAUGGUC------------A--UAUAUUGGGAAAUCCCAGGUCUUCUUCUCACAAUCGCUCCCUCCCUUUCUA .....(((.(((.........(((((((.....))).)------------)--))..(((((....))))).................)))))).......... ( -17.50) >consensus UAAAUGGGCAGCAACAAAAAUUAUGUCAAAAUAUGGGCUUACAUACA___A__UAUAUUGGGAAAUCCCAGGUCUUC___UCACAAUUGCUCCCUCCCUUUCUA .....(((.(((...................((((......))))............(((((....))))).................)))))).......... (-14.02 = -15.02 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:48 2006