Locus 50

Sequence ID X_DroMel_CAF1
Location 226,586 – 226,685
Length 99
Max. P 0.594924
window61

overview

Window 1

Location 226,586 – 226,685
Length 99
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.49
Mean single sequence MFE -24.40
Consensus MFE -20.18
Energy contribution -20.93
Covariance contribution 0.75
Combinations/Pair 1.10
Mean z-score -1.39
Structure conservation index 0.83
SVM decision value 0.12
SVM RNA-class probability 0.594924
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 226586 99 + 22224390
--GCAGCUGAAAAUGAGCAAAAACACUCAGAAACUCUUCCCACUCGACA-ACGGGAACACUCAG--GUCACCAACAGCUGCGUUUUACAGAGAGAACGAGAGA---U
--(((((((....((((........)))).......(((((........-..))))).......--........)))))))(((((......)))))......---. ( -23.80)
>DroSec_CAF1 21504 99 + 1
--GCAGCUGAAAAUGAGCAAAAACACUCAGAAACUCUUCCCACUCGACA-ACGGGAACACUCAG--GUCACCAACAGCUGCGUUUUUCAGAGAGAACGAGAGA---U
--(((((((....((((........)))).......(((((........-..))))).......--........)))))))((((((....))))))......---. ( -24.50)
>DroSim_CAF1 19371 99 + 1
--GCAGCUGAAAAUGAGCAAAAACACUCAGAAACUCUUCCCACUCGACA-ACGGGAACACUCAG--GUCACCAACAGCUGCGUUUUUCAGAGAGAACGAGAGA---U
--(((((((....((((........)))).......(((((........-..))))).......--........)))))))((((((....))))))......---. ( -24.50)
>DroEre_CAF1 22453 99 + 1
--GCAGCUGAAAAUGAGCAAAAACACUCAAAAACUCUUCCCACUCGACG-ACGGGAACACUCGG--GCCAGCAACAGCUGCGUUUUGCAGAGAGAACGAGAGA---U
--(((((((....((((........)))).......(((((........-..))))).......--........)))))))(((((......)))))......---. ( -23.90)
>DroYak_CAF1 23025 99 + 1
--GCAGCUGAAAAUGAGCAAAAACACUCAAAAACUCUUCCCACUCGACG-GCGGGAACACUCGG--GUCAGCAACAGCUGCGUUUCGCAGAGAGAACGAGAGA---U
--(((((((....((((........))))...(((((((((.((....)-).))))).....))--))......))))))).(((((.........)))))..---. ( -26.60)
>DroAna_CAF1 31383 100 + 1
GAGCAGCUGGAAAUC--CAAGAUCCCCAGAAAACUCUUCCCACUCGAUAGGAGGGAACACUCAAAACUCACAGGCAGCUGCAUUUUGA-----GUCUCACUCUCUGG
(((...((((..(((--...)))..))))....))).............((((((...((((((((....(((....)))..))))))-----))....)))))).. ( -23.10)
>consensus
__GCAGCUGAAAAUGAGCAAAAACACUCAAAAACUCUUCCCACUCGACA_ACGGGAACACUCAG__GUCACCAACAGCUGCGUUUUGCAGAGAGAACGAGAGA___U
..(((((((....((((........)))).......(((((...........))))).................)))))))(((((......))))).......... (-20.18 = -20.93 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:21 2006