| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,067,130 – 13,067,230 |
| Length | 100 |
| Max. P | 0.731017 |
| Location | 13,067,130 – 13,067,230 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 90.17 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -18.69 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.731017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13067130 100 + 22224390 UUUUUCAAGAGGCAGAAAAAGUGCAGAGCCUGCGGAUGGUUGAUUAAUUUGAUAAACCGAGCGAUAUAUAUUGCUUGCCGGCUAAUGAAGCCAAUCCAAU ((((((........))))))..((((...))))((((((((.(((.....))).))))(((((((....)))))))...((((.....)))).))))... ( -25.50) >DroSec_CAF1 17387 96 + 1 UUUUCCAAGAGGCAGAAAAAGUAGAGAGCCUGAGGAUGGUUGAUUAAUUUGAUAAA----GCGAUAAAUAUCGCUUGCCGAUUAAUGAAGCCAAUCCAAU .........((((..............))))..((((((((.(((((((.(...((----(((((....))))))).).)))))))..)))).))))... ( -26.64) >DroSim_CAF1 18626 100 + 1 UUUUCCAAGAGGCAGAAAAAGUAGAGAGCCUGAGGAUGGUUGAUUAAUUUGAUAAACCGAGCGAUAAAUAUCGCUUGCCGAUUAAUGAAGCCAAUCCAAU .........((((..............))))..((((((((.(((((((.(......((((((((....))))))))).)))))))..)))).))))... ( -25.24) >DroYak_CAF1 17779 100 + 1 UUUUUCAAGAGGCAAAAAAAGUAGAGAGCUGGAGGAUGCUUGAUUAAUUUGAUAAAGCGAACGAUAAAUAUCGCUUGCCGUUUAAUGAAGGCAAUCCAAU ....((....(((..............))).))((((((((.(((((..((...((((((..........))))))..)).)))))..)))).))))... ( -18.04) >consensus UUUUCCAAGAGGCAGAAAAAGUAGAGAGCCUGAGGAUGGUUGAUUAAUUUGAUAAACCGAGCGAUAAAUAUCGCUUGCCGAUUAAUGAAGCCAAUCCAAU .........((((..............))))..((((((((.(((((((.(......((((((((....))))))))).)))))))..)))).))))... (-18.69 = -19.57 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:48 2006