Locus 4997

Sequence ID X_DroMel_CAF1
Location 13,062,475 – 13,062,570
Length 95
Max. P 0.939857
window8138

overview

Window 8

Location 13,062,475 – 13,062,570
Length 95
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 82.58
Mean single sequence MFE -32.70
Consensus MFE -22.11
Energy contribution -24.23
Covariance contribution 2.12
Combinations/Pair 1.17
Mean z-score -2.66
Structure conservation index 0.68
SVM decision value 1.30
SVM RNA-class probability 0.939857
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13062475 95 + 22224390
GCCCUAGCUUUUGGUGGUGGAUUUCUUGUUCUGGAUUUCGAUCUGGAUCUGGAUCGGGCGAGUAUAGUGCAUCAAAGG-GAUGGGGUUAGGAAUGG
((((((.(((((..(((((.(((.(((((((..((((..(((....)))..)))))))))))...))).)))))))))-).))))))......... ( -29.20)
>DroSec_CAF1 12874 89 + 1
GCCCUAGCUUUUGGUGGUGGAUUUCUUGGUCUGGA------UCUGAAUCUGGAUCUGGCGAGUAUAGUGCAUCAAAGG-GGUGGGGUUAGGAAUGG
((((((.(((((..(((((.(((.((((..(..((------(((......)))))..)))))...))).)))))))))-).))))))......... ( -30.70)
>DroYak_CAF1 12951 94 + 1
GCCCAAGCUUUUGGUGGUGGAU--CUGGAUCUGGAUCUGGGUCUGGAUCUGAAUCUGGCGGGUAUAGUGCACCCAAAGGGGUGGGCAUAGGAGUGG
(((((..(((((...(.(((((--..(((((..(((....)))..)))))..))))).)((((.......)))))))))..))))).......... ( -38.20)
>consensus
GCCCUAGCUUUUGGUGGUGGAUUUCUUGAUCUGGAU_U_G_UCUGGAUCUGGAUCUGGCGAGUAUAGUGCAUCAAAGG_GGUGGGGUUAGGAAUGG
.(((...(((((((((....((((((((((((((((((......)))))))))))))).))))......)))))))))....)))........... (-22.11 = -24.23 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:46 2006