Locus 4992

Sequence ID X_DroMel_CAF1
Location 13,044,665 – 13,044,772
Length 107
Max. P 0.618667
window8131

overview

Window 1

Location 13,044,665 – 13,044,772
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 94.39
Mean single sequence MFE -20.33
Consensus MFE -17.89
Energy contribution -19.33
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 0.17
SVM RNA-class probability 0.618667
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13044665 107 - 22224390
UUUUAUCUGCAAUUGUUUUCUUCUGUAAUUUCUAAGGAUGCAUUUUAUAUCGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACUCCCUCUU
....((((((((.(((.(((((..(......).))))).))).))......)))))).(((((((.......)))))))............................ ( -16.40)
>DroSec_CAF1 14106 106 - 1
UUUAAU-UGCAAUUGUUUUCUUCUGUAAUUUCUAUGGAAGCAUUUCAUUUUGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACGCCCUCUU
......-(((((.((....((((((((.....)))))))).....))..)))))((..(((((((.......)))))))....))...................... ( -19.80)
>DroSim_CAF1 13641 107 - 1
CUUAAUCUGCAAUUGUUUUCUUCUGUAAUUUCUAUGGAAGCAUUUCAUUUUGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACGCCCUCUU
...(((((((((.((....((((((((.....)))))))).....))..)))))))))(((((((.......)))))))............................ ( -24.80)
>consensus
UUUAAUCUGCAAUUGUUUUCUUCUGUAAUUUCUAUGGAAGCAUUUCAUUUUGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACGCCCUCUU
...((((((((..((....((((((((.....)))))))).....))...))))))))(((((((.......)))))))............................ (-17.89 = -19.33 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:39 2006