| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,042,544 – 13,042,638 |
| Length | 94 |
| Max. P | 0.940143 |
| Location | 13,042,544 – 13,042,638 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 72.64 |
| Mean single sequence MFE | -35.67 |
| Consensus MFE | -16.57 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13042544 94 - 22224390 CCUUUGGCCGCAUUCAGCU--GCCAACUGAGCCAAAACCCUUUGGUUUAAAGGGGUUGGGGUUGAGAGGGUGGCUAGAAGGGUUGAGG--------GGGUGGUG ((((..(((.(.((((((.--.((..((.((((..((((((((......))))))))..)))).))..))..))).)))))))..)))--------)....... ( -46.80) >DroEre_CAF1 12495 96 - 1 CCU-CGUCCGCUUUCGUCU--GCCAACUGAGCCAAAACCCUGUUGUUUAAAAG-----GGGUUGAGGGGGUGGCUAGAAGAGUUGUGGGUGAUGAGGGCUGGUG (((-(((((((.(((.(((--((((.((...((..((((((.((.....)).)-----)))))..)))).)))).))).)))..))))...))))))....... ( -33.30) >DroYak_CAF1 12939 81 - 1 CCU-CGUCCGCUUUCAUCUGAGCCAACUGAGCCAAAACCCUUUUGUUCC-AAG-----GGGUUGAGGGGGUGGCUACAAGAGUUGUGU---------------- .((-(((..((((......))))..))(((((((...((((((.(..(.-...-----)..).)))))).))))).)).)))......---------------- ( -26.90) >consensus CCU_CGUCCGCUUUCAUCU__GCCAACUGAGCCAAAACCCUUUUGUUUAAAAG_____GGGUUGAGGGGGUGGCUAGAAGAGUUGUGG________GG_UGGUG .......................(((((.(((((...((((((..(((..........)))..)))))).))))).....)))))................... (-16.57 = -16.80 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:38 2006