Locus 499

Sequence ID X_DroMel_CAF1
Location 1,430,195 – 1,430,296
Length 101
Max. P 0.521259
window775

overview

Window 5

Location 1,430,195 – 1,430,296
Length 101
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 82.92
Mean single sequence MFE -35.66
Consensus MFE -22.02
Energy contribution -22.42
Covariance contribution 0.40
Combinations/Pair 1.18
Mean z-score -1.78
Structure conservation index 0.62
SVM decision value -0.02
SVM RNA-class probability 0.521259
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1430195 101 - 22224390
AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAAAAGUG---GA--AAAAAGC-----GAAAA
.....((((((..((((((((..(((((((-.(((..((.((((((....).))))).))..))).))))....)))..)))))...)---))--..)))))-----).... ( -34.40)
>DroSec_CAF1 34922 98 - 1
AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAA--GGG---AA--A-AAAGC-----GAAAA
.....((((((..((((((((..(((((((-.(((..((.((((((....).))))).))..))).))))....)))..))))--)))---).--.-)))))-----).... ( -39.90)
>DroSim_CAF1 26485 99 - 1
AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAA--GGG---AA--AAAAAGC-----GAAAA
.....((((((..((((((((..(((((((-.(((..((.((((((....).))))).))..))).))))....)))..))))--)))---).--..)))))-----).... ( -38.40)
>DroEre_CAF1 31715 99 - 1
AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCGAAAAA--GAG---GA--AAAAUGC-----GAAAA
.....(((.((..((((((((.((((....-.))))...((((((...((((.((((....))))))))....)))))).)))--)))---))--..)).))-----).... ( -37.00)
>DroWil_CAF1 108931 109 - 1
AGCGACGAUUUCGUCCUUUUUCGGCCUAUGCAGGGAUUGGCAUCGCUGCC---AACUUCGUCGCUGACCAACGCUGCAACAAAAUGUGCACGAUGAAACAGCAGAACAAAAA
((((((((....((((((.....((....))))))))(((((....))))---)...))))))))...((.((.((((........)))))).))................. ( -28.60)
>consensus
AGCGACGCUUUCGUCCUUUUUCGGCCUAUG_AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAA__GGG___GA__AAAAAGC_____GAAAA
(((((((((.............(((((....)))))..((((....))))...)))))))))((((.......))))................................... (-22.02 = -22.42 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:07 2006