Locus 4989

Sequence ID X_DroMel_CAF1
Location 13,040,523 – 13,040,629
Length 106
Max. P 0.609101
window8128

overview

Window 8

Location 13,040,523 – 13,040,629
Length 106
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 85.67
Mean single sequence MFE -14.47
Consensus MFE -13.95
Energy contribution -13.40
Covariance contribution -0.55
Combinations/Pair 1.14
Mean z-score -0.58
Structure conservation index 0.96
SVM decision value 0.15
SVM RNA-class probability 0.609101
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13040523 106 + 22224390
GCCACAUUCAAAUCCCUUUCAAAAUGAACCUAAUUUUCACUAUUUUUUGCUGGUGAAUUCUUCAAGCCCAGAAGCGCAAGCAUUGAUUUUAAAGUUUCUCAAAAAG
...............((((.(((((.((.......(((((((........)))))))((((........))))((....)).)).)))))))))............ ( -13.80)
>DroSec_CAF1 10145 95 + 1
GCCGCAUUCAAAUCCCAUUCAAAAUGAACCCAAUUUUCACUAUUUAUUGCUGGUGAAUUUUCCAAGCCCAGGAGCACUAGCAUCGAUUUUAAAUU-----------
.........(((((..........((((.......))))........((((((((....((((.......))))))))))))..)))))......----------- ( -14.80)
>DroSim_CAF1 10052 95 + 1
GCCGCAUUCAAAUCCCAUUCAAAAUGAACCCAAUUUUCACUAUUUAUUGCUGGUGAAUUUUCCAAGCCCAGGAGCACUAGCAUCGAUUUUAAAUU-----------
.........(((((..........((((.......))))........((((((((....((((.......))))))))))))..)))))......----------- ( -14.80)
>consensus
GCCGCAUUCAAAUCCCAUUCAAAAUGAACCCAAUUUUCACUAUUUAUUGCUGGUGAAUUUUCCAAGCCCAGGAGCACUAGCAUCGAUUUUAAAUU___________
.........(((((..........((((.......))))........((((((((....((((.......))))))))))))..)))))................. (-13.95 = -13.40 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:36 2006