| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,019,911 – 13,020,012 |
| Length | 101 |
| Max. P | 0.657176 |
| Location | 13,019,911 – 13,020,012 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.91 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -16.29 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13019911 101 + 22224390 CGAGUGAACCCCUAAUGAGGCAUAACCU-UUAUGGCGGGCACUGUACUGUCAUUGCCGCCACCAUUGGCAAUUCAAUUAUGCGACGCCUCAA-----------AAAAGAACAC------- ...............((((((.......-...((((((.((.((......)).))))))))......(((.........)))...)))))).-----------..........------- ( -25.40) >DroSim_CAF1 17468 102 + 1 CGAGUGAACCCCUAAUGAGGCAUAACCUUUUAUGGCGGGCACUGUGCUGUCAUUGCCGCCGCCAUUGGCAAUUCAAUUAUGCGACGCCUCAA-----------AAAAGAACAC------- ...............((((((..........((((((((((.((......)).)))..)))))))..(((.........)))...)))))).-----------..........------- ( -27.00) >DroAna_CAF1 19253 114 + 1 CGUCUUGAACCCUAAUGAGGCAUAACCU-UUAUGGCAGCCA----GCUCCCAU-GACUCUGUCAUGGACAAUCGAAUUAUGCCUUACUUUAAAAUGCCGCCAAAUAAAAAUAAAAUAGAA ...............((((((((((...-....(((.....----))).((((-(((...))))))).........)))))))))).................................. ( -22.60) >consensus CGAGUGAACCCCUAAUGAGGCAUAACCU_UUAUGGCGGGCACUGUGCUGUCAUUGCCGCCGCCAUUGGCAAUUCAAUUAUGCGACGCCUCAA___________AAAAGAACAC_______ ...............((((((..........(((((((........))))))).((((.......))))................))))))............................. (-16.29 = -15.97 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:34 2006